View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13435_high_1 (Length: 786)

Name: NF13435_high_1
Description: NF13435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13435_high_1
NF13435_high_1
[»] chr8 (18 HSPs)
chr8 (11-621)||(9572357-9572967)
chr8 (558-617)||(14949900-14949959)
chr8 (573-620)||(25869240-25869287)
chr8 (431-480)||(6950208-6950257)
chr8 (660-759)||(5455817-5455917)
chr8 (573-621)||(6950371-6950419)
chr8 (448-480)||(29972965-29972997)
chr8 (574-621)||(7918419-7918466)
chr8 (565-624)||(8255433-8255492)
chr8 (565-624)||(9700042-9700101)
chr8 (573-611)||(10358627-10358665)
chr8 (576-621)||(9540969-9541014)
chr8 (580-621)||(30987964-30988005)
chr8 (573-621)||(32840958-32841007)
chr8 (565-621)||(33808344-33808401)
chr8 (573-602)||(38421313-38421342)
chr8 (580-621)||(43709318-43709359)
chr8 (580-617)||(45071430-45071467)
[»] chr1 (28 HSPs)
chr1 (559-786)||(6262773-6263001)
chr1 (565-621)||(38867804-38867860)
chr1 (573-624)||(10199378-10199429)
chr1 (493-600)||(30371118-30371224)
chr1 (558-621)||(32515414-32515477)
chr1 (573-620)||(38170664-38170711)
chr1 (580-619)||(44422755-44422794)
chr1 (565-615)||(11639395-11639445)
chr1 (575-621)||(15579533-15579579)
chr1 (573-631)||(29929584-29929642)
chr1 (558-611)||(4699598-4699651)
chr1 (565-610)||(11211159-11211204)
chr1 (572-621)||(48282172-48282221)
chr1 (565-621)||(17269291-17269347)
chr1 (582-621)||(4033990-4034029)
chr1 (581-624)||(10439743-10439786)
chr1 (571-610)||(29045896-29045935)
chr1 (573-620)||(45327629-45327676)
chr1 (573-615)||(17420252-17420294)
chr1 (558-616)||(38266438-38266496)
chr1 (573-611)||(42336664-42336702)
chr1 (573-614)||(17628648-17628689)
chr1 (572-621)||(19389950-19389999)
chr1 (573-618)||(27145591-27145636)
chr1 (565-598)||(27963366-27963399)
chr1 (587-624)||(28467496-28467533)
chr1 (578-623)||(30418153-30418198)
chr1 (565-621)||(47498811-47498868)
[»] chr3 (23 HSPs)
chr3 (573-621)||(37273183-37273231)
chr3 (565-621)||(21574531-21574587)
chr3 (574-621)||(14598526-14598573)
chr3 (573-615)||(3015822-3015864)
chr3 (558-624)||(36646352-36646418)
chr3 (663-727)||(532274-532338)
chr3 (663-727)||(564858-564922)
chr3 (573-621)||(24281096-24281144)
chr3 (573-621)||(40880921-40880969)
chr3 (573-624)||(1217770-1217821)
chr3 (573-624)||(1810026-1810077)
chr3 (565-624)||(40122723-40122782)
chr3 (440-479)||(43116578-43116617)
chr3 (493-539)||(28306128-28306174)
chr3 (573-615)||(37155050-37155092)
chr3 (573-615)||(37200405-37200447)
chr3 (573-611)||(41724261-41724299)
chr3 (563-621)||(42817195-42817253)
chr3 (565-610)||(1823896-1823941)
chr3 (571-616)||(23314495-23314540)
chr3 (580-621)||(25182960-25183001)
chr3 (564-621)||(34707469-34707526)
chr3 (565-598)||(54180776-54180809)
[»] chr6 (24 HSPs)
chr6 (573-624)||(20377890-20377941)
chr6 (440-483)||(32408827-32408870)
chr6 (573-615)||(9027627-9027669)
chr6 (576-624)||(10616511-10616559)
chr6 (573-621)||(30863295-30863343)
chr6 (573-620)||(1669772-1669819)
chr6 (505-624)||(8035118-8035236)
chr6 (580-621)||(27857414-27857455)
chr6 (580-621)||(31338032-31338073)
chr6 (580-621)||(32917253-32917294)
chr6 (584-625)||(34404600-34404641)
chr6 (573-621)||(5731618-5731666)
chr6 (580-624)||(6310220-6310264)
chr6 (580-624)||(20368150-20368194)
chr6 (573-621)||(34404698-34404746)
chr6 (548-615)||(733156-733223)
chr6 (571-614)||(30865800-30865843)
chr6 (565-616)||(33832251-33832302)
chr6 (565-611)||(1575936-1575982)
chr6 (573-615)||(7931705-7931747)
chr6 (572-614)||(33500460-33500502)
chr6 (573-622)||(5566149-5566198)
chr6 (572-621)||(8348274-8348323)
chr6 (580-617)||(9041437-9041474)
[»] chr5 (28 HSPs)
chr5 (573-620)||(29363057-29363104)
chr5 (578-624)||(10152388-10152434)
chr5 (573-626)||(2092513-2092566)
chr5 (551-624)||(35960440-35960513)
chr5 (570-614)||(5531080-5531124)
chr5 (565-620)||(30269707-30269762)
chr5 (580-621)||(32172709-32172750)
chr5 (580-621)||(38047852-38047893)
chr5 (565-621)||(4619748-4619804)
chr5 (580-624)||(11296969-11297013)
chr5 (573-616)||(13604827-13604870)
chr5 (574-621)||(14980559-14980606)
chr5 (573-624)||(23160718-23160769)
chr5 (573-624)||(34205290-34205341)
chr5 (573-624)||(41957421-41957472)
chr5 (573-631)||(1019429-1019487)
chr5 (573-623)||(6109532-6109582)
chr5 (573-615)||(18700433-18700475)
chr5 (493-550)||(9703283-9703340)
chr5 (651-727)||(10842618-10842695)
chr5 (574-615)||(11457148-11457189)
chr5 (572-621)||(12459974-12460023)
chr5 (548-621)||(28586739-28586812)
chr5 (552-617)||(35963269-35963334)
chr5 (588-621)||(38728466-38728499)
chr5 (655-727)||(38779441-38779514)
chr5 (580-617)||(40499703-40499740)
chr5 (477-537)||(41016132-41016193)
[»] chr4 (21 HSPs)
chr4 (571-625)||(21952995-21953049)
chr4 (572-613)||(14986958-14986999)
chr4 (526-613)||(6170370-6170456)
chr4 (515-621)||(2996565-2996670)
chr4 (655-760)||(29262501-29262607)
chr4 (493-623)||(33534140-33534269)
chr4 (565-614)||(1965982-1966031)
chr4 (560-621)||(4684078-4684139)
chr4 (578-615)||(8147922-8147959)
chr4 (577-621)||(6428071-6428115)
chr4 (573-621)||(25583641-25583689)
chr4 (581-621)||(27725271-27725311)
chr4 (573-621)||(46415765-46415813)
chr4 (562-621)||(2841664-2841723)
chr4 (558-621)||(23819123-23819186)
chr4 (439-478)||(24929373-24929412)
chr4 (565-624)||(53315367-53315426)
chr4 (566-624)||(37863924-37863982)
chr4 (441-478)||(8422988-8423025)
chr4 (580-621)||(19429485-19429526)
chr4 (565-602)||(55547036-55547073)
[»] chr7 (18 HSPs)
chr7 (580-620)||(28340394-28340434)
chr7 (553-624)||(3500937-3501008)
chr7 (572-615)||(29287275-29287318)
chr7 (573-616)||(46082085-46082128)
chr7 (573-631)||(28844539-28844597)
chr7 (439-480)||(753353-753394)
chr7 (571-616)||(33645939-33645984)
chr7 (573-610)||(39568308-39568345)
chr7 (573-621)||(33894676-33894724)
chr7 (573-617)||(44615081-44615125)
chr7 (567-613)||(5006492-5006538)
chr7 (573-615)||(6263343-6263385)
chr7 (565-611)||(15740394-15740440)
chr7 (573-615)||(21247975-21248017)
chr7 (589-623)||(31149705-31149739)
chr7 (589-623)||(31167997-31168031)
chr7 (571-621)||(36537955-36538005)
chr7 (581-611)||(44808215-44808245)
[»] chr2 (15 HSPs)
chr2 (573-613)||(10285909-10285949)
chr2 (573-621)||(44606083-44606131)
chr2 (573-616)||(43065428-43065471)
chr2 (573-615)||(9878661-9878703)
chr2 (549-615)||(41809224-41809290)
chr2 (579-620)||(9556294-9556335)
chr2 (587-624)||(43808621-43808658)
chr2 (565-621)||(1494419-1494475)
chr2 (580-624)||(1742002-1742046)
chr2 (565-621)||(11063529-11063585)
chr2 (578-624)||(3673862-3673908)
chr2 (571-621)||(4550794-4550844)
chr2 (440-478)||(9477860-9477898)
chr2 (558-624)||(29430792-29430858)
chr2 (573-614)||(30538153-30538194)
[»] scaffold0012 (1 HSPs)
scaffold0012 (565-610)||(38633-38678)
[»] scaffold0024 (1 HSPs)
scaffold0024 (573-621)||(27625-27673)
[»] scaffold0147 (1 HSPs)
scaffold0147 (573-616)||(12682-12725)
[»] scaffold0044 (1 HSPs)
scaffold0044 (573-611)||(51935-51973)
[»] scaffold0072 (1 HSPs)
scaffold0072 (558-611)||(4993-5046)


Alignment Details
Target: chr8 (Bit Score: 591; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 11 - 621
Target Start/End: Original strand, 9572357 - 9572967
Alignment:
Q  11 cataggcaccctcagaagtagcgttatcagcgtttaaacagctctttccagctgtctcaaaaccttccctagaaattgtatcgaactcggaaaagacatc 110  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572357 cataggcaccctcagaagtagcgttatcagtgtttaaacagctctttccagctgtctcaaaaccttccctagaaattgtatcgaactcggaaaagacatc 9572456  T
Q  111 ttgaccactaactttttcggagggaacattagttaagatagaactccaagggcttgacattaaggtttggcaatctacatttgtagtaccactacaaaga 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572457 ttgaccactaactttttcggagggaacattagttaagatagaactccaagggcttgacattaaggtttggcaatctacatttgtagtaccactacaaaga 9572556  T
Q  211 cttacttctccagttgaattatgatcaggtgaaggtttccaccaaggaagaagtttcaatatcaagtaatcaataagctcagctatgaaagccacatcat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572557 cttacttctccagttgaattatgatcaggtgaaggtttccaccaaggaagaagtttcaatatcaagtaatcaataagctcagctatgaaagccacatcat 9572656  T
Q  311 gatctgccagctccaaatgttcaaccatctccgaggccacggaaactgcagtatctgcatcaaggtaaaagagaaaatgtatattccgtactcgacctgc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572657 gatctgccagctccaaatgttcaaccatctccgaggccacggaaactgcagtatctgcatcaaggtaaaagagaaaatgtatattccgtactcgacctgc 9572756  T
Q  411 aagtaacacaacaagaacattttaggcactgtttcgataaacaacttaattgagtgtttatagcataaactatttcaataacaaaataaattcaaactgt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9572757 aagtaacacaacaagaacattttaggcactgtttcgataaacaacttaattgagtgtttatagcataaactatttcaataacaaaataaattcaaactgt 9572856  T
Q  511 tcccatataaggtacaagttgttttcataggttatttctagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataa 610  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9572857 tctcatataaggtacaagttgttttcataggttatttctagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcgtaa 9572956  T
Q  611 gctctcccaaa 621  Q
    | |||| ||||    
T  9572957 gttctcacaaa 9572967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 558 - 617
Target Start/End: Original strand, 14949900 - 14949959
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcc 617  Q
    |||||| ||||| | |||||| ||||||||||||||||||||||||||||||||||||||    
T  14949900 tatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcc 14949959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 620
Target Start/End: Complemental strand, 25869287 - 25869240
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaa 620  Q
    |||||||||||||||||||||||||||||||| ||||  |||||||||    
T  25869287 aaaacaacttatggacatgtcataagttatttccatagactctcccaa 25869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 431 - 480
Target Start/End: Original strand, 6950208 - 6950257
Alignment:
Q  431 tttaggcactgtttcgataaacaacttaattgagtgtttatagcataaac 480  Q
    |||||||| ||||| |||||||||||||||| |||| |||||||||||||    
T  6950208 tttaggcattgtttagataaacaacttaattaagtgcttatagcataaac 6950257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 660 - 759
Target Start/End: Original strand, 5455817 - 5455917
Alignment:
Q  660 cttgtaaactggactgtaatattgaaacataaattgtaatttgtaaccctaaccttgaataatag-aaatcaatgcaaccactctgtagtcggagacgta 758  Q
    ||||||| | ||||| ||||||| ||||| || |||| ||| |||| |||||  ||||||||||| ||||||  |||||||||||| ||| |||||||||    
T  5455817 cttgtaagccggactataatatttaaacacaagttgttattggtaaacctaagtttgaataatagaaaatcaccgcaaccactctgcagttggagacgta 5455916  T
Q  759 g 759  Q
    |    
T  5455917 g 5455917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 6950371 - 6950419
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||| ||||||||||| ||| ||| ||||||||||||||||    
T  6950371 aaaacaacttatcgacatgtcataggttgtttacataagctctcccaaa 6950419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 448 - 480
Target Start/End: Original strand, 29972965 - 29972997
Alignment:
Q  448 taaacaacttaattgagtgtttatagcataaac 480  Q
    |||||||||||||||||||||||||||||||||    
T  29972965 taaacaacttaattgagtgtttatagcataaac 29972997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 621
Target Start/End: Complemental strand, 7918466 - 7918419
Alignment:
Q  574 aaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| |||||| ||||||| |||||| ||||||||||||||||||||    
T  7918466 aaacagcttatgaacatgtcttaagttgttttcataagctctcccaaa 7918419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 624
Target Start/End: Original strand, 8255433 - 8255492
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||| ||||||||||||| ||||||||| |||| ||| |||||| |||| |||||||    
T  8255433 ataaggtgaaaacaacttatgcacatgtcattagttgtttccataagttctctcaaatag 8255492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 624
Target Start/End: Original strand, 9700042 - 9700101
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||| |||||| |||||||||||||||||| ||  ||||| |||||||| |||||||    
T  9700042 ataaggtgaaaacagcttatggacatgtcataaattgatttcacaagctctctcaaatag 9700101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 611
Target Start/End: Original strand, 10358627 - 10358665
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataag 611  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  10358627 aaaacgacttatgaacatgtcataagttattttcataag 10358665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 576 - 621
Target Start/End: Complemental strand, 9541014 - 9540969
Alignment:
Q  576 acaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||| |||||||||||||||||| | ||| ||||||||||||||||    
T  9541014 acaaattatggacatgtcataagatgtttccataagctctcccaaa 9540969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 621
Target Start/End: Complemental strand, 30988005 - 30987964
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||||||||| ||| ||||||||||| ||||    
T  30988005 cttatggacatgtcataagttgtttccataagctctctcaaa 30987964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 621
Target Start/End: Complemental strand, 32841007 - 32840958
Alignment:
Q  573 aaaacaacttatggaca-tgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||| ||| ||||||||||| |||||||||| |||||||||    
T  32841007 aaaacaacttatgaacaatgtcataagttgttttcataagttctcccaaa 32840958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 33808344 - 33808401
Alignment:
Q  565 ataaggtaaaaacaacttatggaca-tgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||||||||||||||| ||| | ||||||| |||||||||||| |||||||||    
T  33808344 ataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaa 33808401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 602
Target Start/End: Original strand, 38421313 - 38421342
Alignment:
Q  573 aaaacaacttatggacatgtcataagttat 602  Q
    ||||||||||||||||||||||||||||||    
T  38421313 aaaacaacttatggacatgtcataagttat 38421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 43709318 - 43709359
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  43709318 cttatagacatgtcataagttatttccataagctcacccaaa 43709359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 617
Target Start/End: Original strand, 45071430 - 45071467
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcc 617  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  45071430 cttatagacatgtcataagttgttttcataagctctcc 45071467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 559 - 786
Target Start/End: Original strand, 6262773 - 6263001
Alignment:
Q  559 atagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaataggatcacagcctcacaggtgttttcataagagtaa 658  Q
    ||||| ||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6262773 atagaaataagcttaaaacaacttatggacatatcataagttattttcataagctctcccaaataggatcacagcctcacaggtgttttcgtaagagtaa 6262872  T
Q  659 tcttgtaaactggactgtaatattgaaacataaattgtaatttgtaaccctaaccttgaataatag-aaatcaatgcaaccactctgtagtcggagacgt 757  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  6262873 tcttgtaaactgggccgtaatattgaaacataaattgtaatttgtaaccctaaccttgaataatagaaaatcaatgcaaccactctgtagtcggagacgt 6262972  T
Q  758 aggcaataggccgaactctgattagatct 786  Q
    |||||||||||||||||||||||||||||    
T  6262973 aggcaataggccgaactctgattagatct 6263001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 38867860 - 38867804
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||||||||||| |||||||| ||||||||||||| ||||||||||| ||||    
T  38867860 ataagctaaaaacaactgatggacatatcataagttatttccataagctctctcaaa 38867804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 10199429 - 10199378
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||||||||| |||||||||||| ||||||||| || ||||||||||||    
T  10199429 aaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatag 10199378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 493 - 600
Target Start/End: Original strand, 30371118 - 30371224
Alignment:
Q  493 aaaataaattcaaactgttcccatataaggtacaagttgttttcataggttatttctagaaagcgtatagatataaggtaaaaacaacttatggacatgt 592  Q
    |||||||| ||||| ||||  |||||||| || |||||||||||||| |  |||| | || ||||||| || ||||| | ||||||||||||||||||||    
T  30371118 aaaataaactcaaattgttttcatataagctataagttgttttcataagacattt-tggagagcgtattgaaataagctgaaaacaacttatggacatgt 30371216  T
Q  593 cataagtt 600  Q
    ||| ||||    
T  30371217 cattagtt 30371224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 558 - 621
Target Start/End: Complemental strand, 32515477 - 32515414
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||| | |||||||||||| ||||||||||| | | ||| ||||||||||||||||    
T  32515477 tatagatataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaa 32515414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 620
Target Start/End: Complemental strand, 38170711 - 38170664
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaa 620  Q
    ||||||||||||| |||||||||||| | |||||||||||||||||||    
T  38170711 aaaacaacttatgaacatgtcataagctgttttcataagctctcccaa 38170664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 580 - 619
Target Start/End: Original strand, 44422755 - 44422794
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctccca 619  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  44422755 cttatggacatgtcataagctattttcataagctctccca 44422794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 565 - 615
Target Start/End: Complemental strand, 11639445 - 11639395
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    ||||| |||||||| ||||||||||||||||||| | ||||||||||||||    
T  11639445 ataagctaaaaacagcttatggacatgtcataagctgttttcataagctct 11639395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 575 - 621
Target Start/End: Original strand, 15579533 - 15579579
Alignment:
Q  575 aacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||||||||||||||| ||| || |||||||||||||    
T  15579533 aacaacttatggacatgtcataagttgtttccacaagctctcccaaa 15579579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 631
Target Start/End: Complemental strand, 29929642 - 29929584
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaataggatcaca 631  Q
    ||||||||||||| ||||||||| |||| |||||||||||||||| ||| || ||||||    
T  29929642 aaaacaacttatgcacatgtcatgagttgttttcataagctctccaaaacagtatcaca 29929584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 558 - 611
Target Start/End: Complemental strand, 4699651 - 4699598
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataag 611  Q
    |||||| ||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  4699651 tatagaaataagctaaaaacagcttatgaacatgtcataagttgttttcataag 4699598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 610
Target Start/End: Original strand, 11211159 - 11211204
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataa 610  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||    
T  11211159 ataagttaaaaacaacttatggacatgctataagttattttcataa 11211204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 48282172 - 48282221
Alignment:
Q  572 aaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||| ||||    
T  48282172 aaaaacaacgtatggacatgtcataacctattttcataagctctctcaaa 48282221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 17269291 - 17269347
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||||||||||| ||| |||||||||||| ||||||||||||| || |||||    
T  17269291 ataagttaaaaacaactcatgaacatgtcataaggtattttcataagcactaccaaa 17269347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 582 - 621
Target Start/End: Complemental strand, 4034029 - 4033990
Alignment:
Q  582 tatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  4034029 tatggacaagtcataagttattttcataagctctctcaaa 4033990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 624
Target Start/End: Original strand, 10439743 - 10439786
Alignment:
Q  581 ttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||||||||||||  || |||||||||||||||||||||||    
T  10439743 ttatggacatgtcatagtttgttttcataagctctcccaaatag 10439786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 610
Target Start/End: Complemental strand, 29045935 - 29045896
Alignment:
Q  571 taaaaacaacttatggacatgtcataagttattttcataa 610  Q
    ||||| |||||||||||||||||||||||| |||||||||    
T  29045935 taaaagcaacttatggacatgtcataagttgttttcataa 29045896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 620
Target Start/End: Original strand, 45327629 - 45327676
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaa 620  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| |||||    
T  45327629 aaaacaatttatggacatgtcataagttgtttccataagctcccccaa 45327676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 615
Target Start/End: Original strand, 17420252 - 17420294
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    ||||||| |||||||||||| ||||||| ||||||||||||||    
T  17420252 aaaacaatttatggacatgtaataagttgttttcataagctct 17420294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 616
Target Start/End: Complemental strand, 38266496 - 38266438
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    |||||| ||||| | ||||||| ||||| ||||||| |||||||||||||||| |||||    
T  38266496 tatagaaataagttgaaaacaaattatgaacatgtcgtaagttattttcataaactctc 38266438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 611
Target Start/End: Original strand, 42336664 - 42336702
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataag 611  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  42336664 aaaacaacttttggacatgtcataagttgttttcataag 42336702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 614
Target Start/End: Original strand, 17628648 - 17628689
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctc 614  Q
    |||||| ||||||||||||||||||||| ||| |||||||||    
T  17628648 aaaacagcttatggacatgtcataagttgtttccataagctc 17628689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 19389950 - 19389999
Alignment:
Q  572 aaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||| |||| ||||||||| |||||||| | |||||||||    
T  19389950 aaaaacaacttatgaacatatcataagtttttttcatacgttctcccaaa 19389999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 618
Target Start/End: Original strand, 27145591 - 27145636
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctccc 618  Q
    |||| ||||||||||||||||||||| | ||| |||||||||||||    
T  27145591 aaaataacttatggacatgtcataagctttttccataagctctccc 27145636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 27963399 - 27963366
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataag 598  Q
    ||||| ||||||||||||||||||||||||||||    
T  27963399 ataagctaaaaacaacttatggacatgtcataag 27963366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 587 - 624
Target Start/End: Original strand, 28467496 - 28467533
Alignment:
Q  587 acatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  28467496 acatgtcataagttatttccataatctctcccaaatag 28467533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 578 - 623
Target Start/End: Complemental strand, 30418198 - 30418153
Alignment:
Q  578 aacttatggacatgtcataagttattttcataagctctcccaaata 623  Q
    ||||||||||||||||||||||| ||| |||||| ||| |||||||    
T  30418198 aacttatggacatgtcataagttgtttccataaggtctaccaaata 30418153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 47498868 - 47498811
Alignment:
Q  565 ataaggtaaaaacaacttatggaca-tgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||||||||||||||| ||| | ||||||| |||||||||||| |||||||||    
T  47498868 ataagctaaaaacaacttatgaacaatatcataagctattttcataagttctcccaaa 47498811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 37273183 - 37273231
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  37273183 aaaacaacttatggacatgtcataagttgtttccataagctctcccaaa 37273231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 21574531 - 21574587
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||||| || |||||| |||||||||||||| ||||||||||||||||||||    
T  21574531 ataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctcccaaa 21574587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 574 - 621
Target Start/End: Complemental strand, 14598573 - 14598526
Alignment:
Q  574 aaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||||||||||||||||||| ||||| ||| ||||||    
T  14598573 aaacaacttatggacatgtcataagttatttccataaactcccccaaa 14598526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 615
Target Start/End: Complemental strand, 3015864 - 3015822
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  3015864 aaaacatcttatggacatgtcataagttgttttcataagctct 3015822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 558 - 624
Target Start/End: Complemental strand, 36646418 - 36646352
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||| ||||| | |||||| |||||||||||| |||||||  ||| |||||||||||||||||||    
T  36646418 tatagaaataagatgaaaacagcttatggacatgccataagtggtttccataagctctcccaaatag 36646352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 727
Target Start/End: Complemental strand, 532338 - 532274
Alignment:
Q  663 gtaaactggactgtaatattgaaacataaattgtaatttgtaaccctaaccttgaataatagaaa 727  Q
    |||| ||||||||||||||| ||||| || |||||||||||||| ||||   |||||||||||||    
T  532338 gtaagctggactgtaatatttaaacacaagttgtaatttgtaactctaaaagtgaataatagaaa 532274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 727
Target Start/End: Complemental strand, 564922 - 564858
Alignment:
Q  663 gtaaactggactgtaatattgaaacataaattgtaatttgtaaccctaaccttgaataatagaaa 727  Q
    |||| ||||||||||||||| ||||| || |||||||||||||| ||||   |||||||||||||    
T  564922 gtaagctggactgtaatatttaaacacaagttgtaatttgtaactctaaaagtgaataatagaaa 564858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 24281096 - 24281144
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||| || ||||||||| ||||||||||||||| ||||    
T  24281096 aaaacaacttatggagatatcataagttgttttcataagctctctcaaa 24281144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Complemental strand, 40880969 - 40880921
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||| || ||||||||||||| ||||||||||||||| ||||    
T  40880969 aaaacaacttacggtcatgtcataagttgttttcataagctctctcaaa 40880921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 1217821 - 1217770
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  1217821 aaaacaacttatggacatgtcataagctgtttccgtaagctcttccaaatag 1217770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 624
Target Start/End: Original strand, 1810026 - 1810077
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||||| |||||||||||||||||| ||| | ||||||||| |||||||    
T  1810026 aaaacaactcatggacatgtcataagttgtttccgtaagctctctcaaatag 1810077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 624
Target Start/End: Complemental strand, 40122782 - 40122723
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||| |||||||||||||| || |||||||||  |||||||||||||| | ||||||||    
T  40122782 ataagctaaaaacaacttatagagatgtcataaactattttcataagctattccaaatag 40122723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 440 - 479
Target Start/End: Complemental strand, 43116617 - 43116578
Alignment:
Q  440 tgtttcgataaacaacttaattgagtgtttatagcataaa 479  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  43116617 tgtttggataaacaacttaatttagtgtttatagcataaa 43116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 28306128 - 28306174
Alignment:
Q  493 aaaataaattcaaactgttcccatataaggtacaagttgttttcata 539  Q
    |||||||| ||||||||||  |||||||| |||||||||||||||||    
T  28306128 aaaataaagtcaaactgttttcatataagttacaagttgttttcata 28306174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 615
Target Start/End: Original strand, 37155050 - 37155092
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  37155050 aaaacaacttatggacatgtaataagttatttccataaactct 37155092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 615
Target Start/End: Original strand, 37200405 - 37200447
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||    
T  37200405 aaaacaacttatggacatgtaataagttatttccataaactct 37200447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 611
Target Start/End: Original strand, 41724261 - 41724299
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataag 611  Q
    |||||||||||||||||||||||||||| ||| ||||||    
T  41724261 aaaacaacttatggacatgtcataagttgtttccataag 41724299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 563 - 621
Target Start/End: Complemental strand, 42817253 - 42817195
Alignment:
Q  563 atataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||| | |||||||||||||||||||||||| | | ||| ||||||||||| ||||    
T  42817253 atataagctgaaaacaacttatggacatgtcatatgctgtttccataagctctctcaaa 42817195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 610
Target Start/End: Complemental strand, 1823941 - 1823896
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataa 610  Q
    ||||| |||||||||||||||||||| |||| ||||||||| ||||    
T  1823941 ataagctaaaaacaacttatggacatatcattagttatttttataa 1823896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 616
Target Start/End: Original strand, 23314495 - 23314540
Alignment:
Q  571 taaaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    |||||| |||||||| |||||||||||| |||||||| ||||||||    
T  23314495 taaaaataacttatgaacatgtcataagctattttcaaaagctctc 23314540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 621
Target Start/End: Complemental strand, 25183001 - 25182960
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||| |||||||||||| ||||||||||||||| ||||    
T  25183001 cttatggatatgtcataagttgttttcataagctctctcaaa 25182960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 621
Target Start/End: Complemental strand, 34707526 - 34707469
Alignment:
Q  564 tataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||| | |||||||||||||||||||||| ||||| |||||| ||| |||| ||||    
T  34707526 tataagttgaaaacaacttatggacatgtcacaagttgttttcaaaagttctctcaaa 34707469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 598
Target Start/End: Complemental strand, 54180809 - 54180776
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataag 598  Q
    ||||| ||||||||||||||||||||||||||||    
T  54180809 ataagctaaaaacaacttatggacatgtcataag 54180776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 20377941 - 20377890
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  20377941 aaaacaacttatagacatgtcataagttgttttcataagctctcctaaatag 20377890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 440 - 483
Target Start/End: Original strand, 32408827 - 32408870
Alignment:
Q  440 tgtttcgataaacaacttaattgagtgtttatagcataaactat 483  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  32408827 tgtttcgataaacaacttaattaagtgtttatagcataaactat 32408870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 573 - 615
Target Start/End: Original strand, 9027627 - 9027669
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||||||||||||||||||||||||||| ||||||||||    
T  9027627 aaaacaacttatggacatgtcataagttatttccataagctct 9027669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 576 - 624
Target Start/End: Complemental strand, 10616559 - 10616511
Alignment:
Q  576 acaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||    
T  10616559 acaacttacggacatgtcataagttgtttccataagctctcccaaatag 10616511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 30863295 - 30863343
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||| |||||||||||||| |||||||||||||| |||||    
T  30863295 aaaacaacttatgtacatgtcataagttgttttcataagctctaccaaa 30863343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 620
Target Start/End: Complemental strand, 1669819 - 1669772
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaa 620  Q
    |||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  1669819 aaaacagcttatagacatgtcataagttgttttcataagctctcccaa 1669772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 505 - 624
Target Start/End: Complemental strand, 8035236 - 8035118
Alignment:
Q  505 aactgttcccatataaggtacaagttgttttcataggttatttctagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattt 604  Q
    |||||||  |||||||| || |||||||||||||| |||||  ||||||||| ||   | ||||| | ||||||| |||||  ||||||||||||| |||    
T  8035236 aactgttttcatataagctagaagttgttttcataagttatc-ctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgttt 8035138  T
Q  605 tcataagctctcccaaatag 624  Q
    || |||| ||||||||||||    
T  8035137 tcttaagttctcccaaatag 8035118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 27857414 - 27857455
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||| |||||||||||| ||||||||||||||||||||    
T  27857414 cttatggagatgtcataagttgttttcataagctctcccaaa 27857455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 31338032 - 31338073
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  31338032 cttatggacatgtcataagttgttttcataagctctcacaaa 31338073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 32917253 - 32917294
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  32917253 cttatggacatgtcataagttgtttccataagctctcccaaa 32917294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 584 - 625
Target Start/End: Original strand, 34404600 - 34404641
Alignment:
Q  584 tggacatgtcataagttattttcataagctctcccaaatagg 625  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  34404600 tggacatgtcataagttgtttccataagctctcccaaatagg 34404641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 5731618 - 5731666
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||| |||||| ||||||| |||||||||||||||| |||||    
T  5731618 aaaacaacttacggacatatcataagctattttcataagctctaccaaa 5731666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 580 - 624
Target Start/End: Complemental strand, 6310264 - 6310220
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||| ||||||||||||||| |||||||||||||||| ||||||    
T  6310264 cttatagacatgtcataagttgttttcataagctctccaaaatag 6310220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 580 - 624
Target Start/End: Complemental strand, 20368194 - 20368150
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||| |||||||||||||| |||||||||| ||||||||||||    
T  20368194 cttatgaacatgtcataagttgttttcataagttctcccaaatag 20368150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Complemental strand, 34404746 - 34404698
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||| |||||| |||||||||||| |||||||||||| |||||||||    
T  34404746 aaaacagcttatgtacatgtcataagatattttcataagttctcccaaa 34404698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 548 - 615
Target Start/End: Complemental strand, 733223 - 733156
Alignment:
Q  548 ctagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    ||||||| | |||||| ||| | | |||||||||| ||||||||||||||||||||| ||| ||||||    
T  733223 ctagaaaacttatagaaatatgctgaaaacaacttgtggacatgtcataagttatttccatcagctct 733156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 571 - 614
Target Start/End: Original strand, 30865800 - 30865843
Alignment:
Q  571 taaaaacaacttatggacatgtcataagttattttcataagctc 614  Q
    |||||||||||||||||||||| ||||| | |||||||||||||    
T  30865800 taaaaacaacttatggacatgtgataagctgttttcataagctc 30865843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 616
Target Start/End: Complemental strand, 33832302 - 33832251
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    ||||| ||||||||||||||  |||||||||||||| |||||||||| ||||    
T  33832302 ataagctaaaaacaacttataaacatgtcataagttgttttcataagttctc 33832251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 611
Target Start/End: Original strand, 1575936 - 1575982
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataag 611  Q
    ||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  1575936 ataagttaaaaacagcttatgaacatgtcataagttgttttcataag 1575982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 615
Target Start/End: Complemental strand, 7931747 - 7931705
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    ||||||||||| | |||||||||||||| ||||||||||||||    
T  7931747 aaaacaacttaagaacatgtcataagttgttttcataagctct 7931705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 572 - 614
Target Start/End: Complemental strand, 33500502 - 33500460
Alignment:
Q  572 aaaaacaacttatggacatgtcataagttattttcataagctc 614  Q
    |||||||||||||| ||||||||||| || |||||||||||||    
T  33500502 aaaaacaacttatgcacatgtcataaattgttttcataagctc 33500460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 622
Target Start/End: Complemental strand, 5566198 - 5566149
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaat 622  Q
    |||||||||||||||||||| ||||| | ||||||| ||||||| |||||    
T  5566198 aaaacaacttatggacatgtaataagctgttttcattagctctcacaaat 5566149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 621
Target Start/End: Original strand, 8348274 - 8348323
Alignment:
Q  572 aaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||| ||||| ||||||| ||||| ||||||||| ||||    
T  8348274 aaaaacaacttatggtcatgttataagttgttttcgtaagctctctcaaa 8348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 617
Target Start/End: Complemental strand, 9041474 - 9041437
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcc 617  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  9041474 cttatggacatgtcataagctattttcgtaagctctcc 9041437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 573 - 620
Target Start/End: Original strand, 29363057 - 29363104
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaa 620  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||    
T  29363057 aaaacaacttatgggcatgtcataagttgttttcataagctctcccaa 29363104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 578 - 624
Target Start/End: Original strand, 10152388 - 10152434
Alignment:
Q  578 aacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  10152388 aacttatggacatgtcataagttgttttcataagctctccaaaatag 10152434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 573 - 626
Target Start/End: Complemental strand, 2092566 - 2092513
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatagga 626  Q
    ||||||||||||||||||| |||||||| |||  ||||||||||||||||||||    
T  2092566 aaaacaacttatggacatgccataagttgtttcaataagctctcccaaatagga 2092513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 551 - 624
Target Start/End: Original strand, 35960440 - 35960513
Alignment:
Q  551 gaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||||| ||| ||||| |||||||| |||||||||||||| ||||||  || ||||||||||| |||||||    
T  35960440 gaaagcgtaaagaaataagctaaaaacatcttatggacatgtcgtaagttgcttccataagctctctcaaatag 35960513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 570 - 614
Target Start/End: Original strand, 5531080 - 5531124
Alignment:
Q  570 gtaaaaacaacttatggacatgtcataagttattttcataagctc 614  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  5531080 gtaaaaacaacttatggacatatcataagttgttttcataagctc 5531124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 565 - 620
Target Start/End: Complemental strand, 30269762 - 30269707
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaa 620  Q
    ||||| |||||||||||||||| ||||| ||||||| |||| ||||||||||||||    
T  30269762 ataagctaaaaacaacttatgggcatgttataagttgttttaataagctctcccaa 30269707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 621
Target Start/End: Original strand, 32172709 - 32172750
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  32172709 cttatggacatgtcataagttgtttccataagctctcccaaa 32172750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 580 - 621
Target Start/End: Complemental strand, 38047893 - 38047852
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||||||||| ||| ||||||||||||||||    
T  38047893 cttatggacatgtcataagttgtttccataagctctcccaaa 38047852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 4619748 - 4619804
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||| ||| || |||||| ||||||||| |||| ||||||||||||||||||||    
T  4619748 ataaggtgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaa 4619804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 580 - 624
Target Start/End: Complemental strand, 11297013 - 11296969
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||    
T  11297013 cttatggacaggtcataagttgttttcataagctcttccaaatag 11296969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 616
Target Start/End: Complemental strand, 13604870 - 13604827
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    |||||||| ||||||||||||||||| | |||||||||||||||    
T  13604870 aaaacaacgtatggacatgtcataagctgttttcataagctctc 13604827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 621
Target Start/End: Original strand, 14980559 - 14980606
Alignment:
Q  574 aaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||| ||||||||||||| ||||| |||||||||| ||||    
T  14980559 aaacaacttatgtacatgtcataagtcatttttataagctctctcaaa 14980606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 624
Target Start/End: Original strand, 23160718 - 23160769
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||||  |||||||||||||||||| |||||| ||| ||||||||||||    
T  23160718 aaaacaacccatggacatgtcataagttgttttcaaaagatctcccaaatag 23160769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 624
Target Start/End: Original strand, 34205290 - 34205341
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||||||||||| ||||| |||||||| ||| |||||||||||| ||||||    
T  34205290 aaaacaacttatgaacatgacataagttgtttccataagctctccaaaatag 34205341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 41957472 - 41957421
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||||||||||||||||||||| | ||| | |||||||| ||||||||    
T  41957472 aaaacaacttatggacatgtcataagctgtttccgtaagctcttccaaatag 41957421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 631
Target Start/End: Complemental strand, 1019487 - 1019429
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaataggatcaca 631  Q
    |||||||||||||| |||| |||||| |||||| ||||||||||| ||| || ||||||    
T  1019487 aaaacaacttatggccatggcataagctatttttataagctctcctaaacagtatcaca 1019429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 623
Target Start/End: Original strand, 6109532 - 6109582
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaata 623  Q
    |||||||||||||||||| |||||| || ||| |||||||||||| |||||    
T  6109532 aaaacaacttatggacatatcataatttttttccataagctctccaaaata 6109582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 615
Target Start/End: Original strand, 18700433 - 18700475
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||||||| ||||||||||||||| ||| ||||||||||    
T  18700433 aaaacaacttatagacatgtcataagttgtttccataagctct 18700475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 550
Target Start/End: Complemental strand, 9703340 - 9703283
Alignment:
Q  493 aaaataaattcaaactgttcccatataaggtacaagttgttttcataggttatttcta 550  Q
    |||||||| |||||||  |  |||||||| ||||||||||||||||| ||||||||||    
T  9703340 aaaataaagtcaaactcatttcatataagctacaagttgttttcataagttatttcta 9703283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 651 - 727
Target Start/End: Complemental strand, 10842695 - 10842618
Alignment:
Q  651 aagagtaatcttgtaaactggactgtaatattgaaacataaattgtaatttgtaac-cctaaccttgaataatagaaa 727  Q
    |||||||| ||| |||| ||||| ||| |||| ||||| |||||||||| |||||  ||||| |||||||||||||||    
T  10842695 aagagtaaccttataaattggaccgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaataatagaaa 10842618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 574 - 615
Target Start/End: Original strand, 11457148 - 11457189
Alignment:
Q  574 aaacaacttatggacatgtcataagttattttcataagctct 615  Q
    ||||| ||||||||||||||||||||| ||| ||||||||||    
T  11457148 aaacagcttatggacatgtcataagttgtttccataagctct 11457189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 12460023 - 12459974
Alignment:
Q  572 aaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||| |||| |||||||||||||| |||||||| | |||||||||    
T  12460023 aaaaacaacatatgaacatgtcataagttgttttcataggttctcccaaa 12459974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 548 - 621
Target Start/End: Complemental strand, 28586812 - 28586739
Alignment:
Q  548 ctagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||| ||| || ||||| | |||||| |||| ||| |||||||||| ||||| ||||||||||||||||    
T  28586812 ctagagagcttatcgaaataagctgaaaacagcttacggatatgtcataagctatttccataagctctcccaaa 28586739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 552 - 617
Target Start/End: Original strand, 35963269 - 35963334
Alignment:
Q  552 aaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcc 617  Q
    ||||| ||| || ||||| | |||||||||||||||||||||||| | ||||| |||||| |||||    
T  35963269 aaagcttatggaaataagctgaaaacaacttatggacatgtcatacgctatttccataagttctcc 35963334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 588 - 621
Target Start/End: Original strand, 38728466 - 38728499
Alignment:
Q  588 catgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||| ||||||||||||||||||||||    
T  38728466 catgtcataagctattttcataagctctcccaaa 38728499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 655 - 727
Target Start/End: Original strand, 38779441 - 38779514
Alignment:
Q  655 gtaatcttgtaaactggactgtaatattgaaacataaattgtaatttg-taaccctaaccttgaataatagaaa 727  Q
    ||||||||||||||||||||||| |||| ||||| || ||||| | ||  |||||||| ||||| |||||||||    
T  38779441 gtaatcttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaa 38779514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 617
Target Start/End: Complemental strand, 40499740 - 40499703
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcc 617  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40499740 cttatggacatgtcataagttgtttccataagctctcc 40499703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 477 - 537
Target Start/End: Original strand, 41016132 - 41016193
Alignment:
Q  477 aaactatttcaataacaaaa-taaattcaaactgttcccatataaggtacaagttgttttca 537  Q
    |||||||||| ||| ||||| |||||||||||||||  |||||||| || ||||||||||||    
T  41016132 aaactatttctatagcaaaaataaattcaaactgttttcatataagctataagttgttttca 41016193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 571 - 625
Target Start/End: Original strand, 21952995 - 21953049
Alignment:
Q  571 taaaaacaacttatggacatgtcataagttattttcataagctctcccaaatagg 625  Q
    ||||||||  |||||||||||||||||||| ||| ||||||||||||||||||||    
T  21952995 taaaaacaggttatggacatgtcataagttctttccataagctctcccaaatagg 21953049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 572 - 613
Target Start/End: Complemental strand, 14986999 - 14986958
Alignment:
Q  572 aaaaacaacttatggacatgtcataagttattttcataagct 613  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  14986999 aaaaccaacttatggacatgtcataagttattttcataagct 14986958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 526 - 613
Target Start/End: Original strand, 6170370 - 6170456
Alignment:
Q  526 aagttgttttcataggttatttctagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagct 613  Q
    |||||||||||||| |||||| ||||||||| |||||| ||||| |||||| || |||||||||||   ||| ||||||||| |||||    
T  6170370 aagttgttttcataagttatt-ctagaaagcatatagaaataagttaaaaataatttatggacatgctgtaaattattttcagaagct 6170456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 515 - 621
Target Start/End: Original strand, 2996565 - 2996670
Alignment:
Q  515 atataaggtacaagttgttttcataggttatttctagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctc 614  Q
    ||||||| || |||||||||||||| | ||| | | || |||||||  | ||||| | |||| | ||||||||||||||||||||| |||||||||||||    
T  2996565 atataagttataagttgttttcataagctatct-tggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctc 2996663  T
Q  615 tcccaaa 621  Q
    || ||||    
T  2996664 tctcaaa 2996670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 655 - 760
Target Start/End: Complemental strand, 29262607 - 29262501
Alignment:
Q  655 gtaatcttgtaaactggactgtaatattgaaacataaattgtaatttgtaaccctaaccttgaataatag-aaatcaatgcaaccactctgtagtcggag 753  Q
    |||| ||||||||||| || ||| | |||||||| || ||||||| | ||||||||| |||| ||||||| |||| | |||||| |||||| ||||||||    
T  29262607 gtaaacttgtaaactgaaccgtagttttgaaacacaagttgtaatctataaccctaagcttggataatagaaaattactgcaactactctgcagtcggag 29262508  T
Q  754 acgtagg 760  Q
    || ||||    
T  29262507 acatagg 29262501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 623
Target Start/End: Complemental strand, 33534269 - 33534140
Alignment:
Q  493 aaaataaattcaaactgttcccatataaggtacaagttgttttcataggttatttctagaaagcgtatagatataaggtaaaaacaacttatggacatgt 592  Q
    |||||||| |||||| ||| | ||||||  |||||||||||||| ||  |||||| | || ||| |||  | ||||| | ||||||||||||||| ||||    
T  33534269 aaaataaaatcaaaccgtttctatataatctacaagttgttttcgtaaattattttt-gagagcttatgaaaataagctgaaaacaacttatggatatgt 33534171  T
Q  593 cataagttattttcataagctctcccaaata 623  Q
    || || || ||||||||||||||| ||||||    
T  33534170 cacaatttgttttcataagctctctcaaata 33534140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 614
Target Start/End: Original strand, 1965982 - 1966031
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctc 614  Q
    ||||| |||||||| |||||| |||||||||||||| |||||||||||||    
T  1965982 ataagttaaaaacagcttatgaacatgtcataagttgttttcataagctc 1966031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 621
Target Start/End: Complemental strand, 4684139 - 4684078
Alignment:
Q  560 tagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||| ||||| |||||||| |||| ||||||||| |||||||||||  ||||||||||||||    
T  4684139 tagaaataagctaaaaacagcttacggacatgtcttaagttattttactaagctctcccaaa 4684078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 578 - 615
Target Start/End: Original strand, 8147922 - 8147959
Alignment:
Q  578 aacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||||||||||||||||||||||||||| |||||    
T  8147922 aacttatggacatgtcataagttattttcatatgctct 8147959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 577 - 621
Target Start/End: Original strand, 6428071 - 6428115
Alignment:
Q  577 caacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||    
T  6428071 caacttatggacatgtcataagttgttttcataatctctctcaaa 6428115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 25583641 - 25583689
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||| ||||||||||||||||| ||| ||||||| ||||||||    
T  25583641 aaaacaacttttggacatgtcataagttgtttgcataagcgctcccaaa 25583689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 581 - 621
Target Start/End: Original strand, 27725271 - 27725311
Alignment:
Q  581 ttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||||||||||||| ||||||||||| ||||    
T  27725271 ttatggacatgtcataagttatttccataagctctctcaaa 27725311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Complemental strand, 46415813 - 46415765
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||||||||||||| ||| ||| ||||| ||||||||||    
T  46415813 aaaacaacttatggacatgtcataggttgtttgcataaactctcccaaa 46415765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 621
Target Start/End: Original strand, 2841664 - 2841723
Alignment:
Q  562 gatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||| | |||||||||||| |||||||||||||||  |||||||| ||||| ||||    
T  2841664 gatataagctgaaaacaacttattgacatgtcataagttgctttcataaactctcgcaaa 2841723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 558 - 621
Target Start/End: Original strand, 23819123 - 23819186
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||| ||||| | |||||||||||||||||||||||||| | ||||| ||| |||| |||||    
T  23819123 tatagaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaa 23819186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 439 - 478
Target Start/End: Original strand, 24929373 - 24929412
Alignment:
Q  439 ctgtttcgataaacaacttaattgagtgtttatagcataa 478  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  24929373 ctgtttggataaacaacttaattgagtgtttataacataa 24929412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 565 - 624
Target Start/End: Original strand, 53315367 - 53315426
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    ||||| |||||| | ||||||||||||| ||| ||| ||||||||||||||| |||||||    
T  53315367 ataagttaaaaatagcttatggacatgtgatatgttgttttcataagctctcacaaatag 53315426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 566 - 624
Target Start/End: Complemental strand, 37863982 - 37863924
Alignment:
Q  566 taaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||| ||||||||||||| || ||||||||| | |||||||||| |||| |||||||    
T  37863982 taaggtgaaaacaacttatgaacgtgtcataagctgttttcataagttctctcaaatag 37863924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 441 - 478
Target Start/End: Complemental strand, 8423025 - 8422988
Alignment:
Q  441 gtttcgataaacaacttaattgagtgtttatagcataa 478  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  8423025 gtttggataaacaacttaattaagtgtttatagcataa 8422988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 621
Target Start/End: Complemental strand, 19429526 - 19429485
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||||||||| | | ||||||||||||||||    
T  19429526 cttatggacatgtcataagttttctccataagctctcccaaa 19429485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 602
Target Start/End: Complemental strand, 55547073 - 55547036
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttat 602  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  55547073 ataagctaaaaacaacttatagacatgtcataagttat 55547036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 580 - 620
Target Start/End: Complemental strand, 28340434 - 28340394
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaa 620  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  28340434 cttatggacatgtcataagttgttttcataagctctcccaa 28340394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 553 - 624
Target Start/End: Complemental strand, 3501008 - 3500937
Alignment:
Q  553 aagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||| || ||||| | |||||| || ||| |||||||||||||||||| ||||||||||| |||||||    
T  3501008 aagcgtatggaaataagctgaaaacagctgatgtacatgtcataagttatttccataagctctcacaaatag 3500937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 572 - 615
Target Start/End: Original strand, 29287275 - 29287318
Alignment:
Q  572 aaaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  29287275 aaaaacaatttatggacatgtcataagctattttcataagctct 29287318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 616
Target Start/End: Original strand, 46082085 - 46082128
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    |||||||||||||| ||||||||||||| |||||||||||||||    
T  46082085 aaaacaacttatggtcatgtcataagttgttttcataagctctc 46082128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 631
Target Start/End: Original strand, 28844539 - 28844597
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaataggatcaca 631  Q
    ||||||||| |||||||||||||||||| |||||| ||||||||| ||| || ||||||    
T  28844539 aaaacaactgatggacatgtcataagttgttttcagaagctctcctaaacagtatcaca 28844597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 439 - 480
Target Start/End: Complemental strand, 753394 - 753353
Alignment:
Q  439 ctgtttcgataaacaacttaattgagtgtttatagcataaac 480  Q
    |||||| |||||||||||||||| ||||||||||||||||||    
T  753394 ctgtttggataaacaacttaattaagtgtttatagcataaac 753353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 571 - 616
Target Start/End: Complemental strand, 33645984 - 33645939
Alignment:
Q  571 taaaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    |||||||||||||| ||||||||||||||| ||| |||||||||||    
T  33645984 taaaaacaacttatagacatgtcataagttgtttccataagctctc 33645939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 610
Target Start/End: Complemental strand, 39568345 - 39568308
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataa 610  Q
    |||||||||||||||||||||||||||||||| |||||    
T  39568345 aaaacaacttatggacatgtcataagttatttccataa 39568308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 33894676 - 33894724
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||||||||||||| | | ||||||||||||||| ||||    
T  33894676 aaaacaacttatggacatgtcatatgctgttttcataagctctcacaaa 33894724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 617
Target Start/End: Complemental strand, 44615125 - 44615081
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcc 617  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||    
T  44615125 aaaacagcttgtggacatgtcataagttgttttcataagctctcc 44615081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 567 - 613
Target Start/End: Complemental strand, 5006538 - 5006492
Alignment:
Q  567 aaggtaaaaacaacttatggacatgtcataagttattttcataagct 613  Q
    |||||||||||||||||| ||||||| ||||||| ||| ||||||||    
T  5006538 aaggtaaaaacaacttatagacatgttataagttgtttccataagct 5006492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 615
Target Start/End: Complemental strand, 6263385 - 6263343
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||||||||||||| ||||||||||||| | ||||||||    
T  6263385 aaaacaacttatggacatctcataagttatttgcgtaagctct 6263343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 565 - 611
Target Start/End: Complemental strand, 15740440 - 15740394
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataag 611  Q
    ||||| |||||||| |||||| |||||||||||||| ||||||||||    
T  15740440 ataagttaaaaacagcttatgaacatgtcataagttgttttcataag 15740394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 615
Target Start/End: Original strand, 21247975 - 21248017
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||    
T  21247975 aaaacaacttatgaacatgtcataagttatttccataaactct 21248017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 623
Target Start/End: Original strand, 31149705 - 31149739
Alignment:
Q  589 atgtcataagttattttcataagctctcccaaata 623  Q
    |||||||||||||||||||||||||||| ||||||    
T  31149705 atgtcataagttattttcataagctctctcaaata 31149739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 589 - 623
Target Start/End: Original strand, 31167997 - 31168031
Alignment:
Q  589 atgtcataagttattttcataagctctcccaaata 623  Q
    |||||||||||||||||||||||||||| ||||||    
T  31167997 atgtcataagttattttcataagctctctcaaata 31168031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 621
Target Start/End: Original strand, 36537955 - 36538005
Alignment:
Q  571 taaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||||||||||||| |||||||||||||| ||| |||||| |||| ||||    
T  36537955 taaaaacaacttatgaacatgtcataagttgtttccataagttctctcaaa 36538005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 581 - 611
Target Start/End: Original strand, 44808215 - 44808245
Alignment:
Q  581 ttatggacatgtcataagttattttcataag 611  Q
    |||||||||||||||||||||||||||||||    
T  44808215 ttatggacatgtcataagttattttcataag 44808245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 613
Target Start/End: Original strand, 10285909 - 10285949
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagct 613  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  10285909 aaaacagcttatggacatgtcataagttattttcataagct 10285949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 621
Target Start/End: Complemental strand, 44606131 - 44606083
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||||||||||||||||||| |||||||||| ||| |||||    
T  44606131 aaaacaacttatggacatgtcataagttgttttcataagttcttccaaa 44606083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 573 - 616
Target Start/End: Complemental strand, 43065471 - 43065428
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  43065471 aaaacaatttatggacatgtcataagttgttttcataagctctc 43065428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 573 - 615
Target Start/End: Complemental strand, 9878703 - 9878661
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||||||||||||||||||||||| ||| ||||||||||    
T  9878703 aaaacaacttatggacatgtcataagttgtttccataagctct 9878661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 549 - 615
Target Start/End: Complemental strand, 41809290 - 41809224
Alignment:
Q  549 tagaaagcgtatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctct 615  Q
    |||||||| ||| || ||||| ||||||||||||||| |||||||||||||| ||| || |||||||    
T  41809290 tagaaagcttatggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctct 41809224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 579 - 620
Target Start/End: Original strand, 9556294 - 9556335
Alignment:
Q  579 acttatggacatgtcataagttattttcataagctctcccaa 620  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  9556294 acttatggacatgtcattagttgttttcataagctctcccaa 9556335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 624
Target Start/End: Original strand, 43808621 - 43808658
Alignment:
Q  587 acatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||||||||||||||||||||||||| |||||||    
T  43808621 acatgtcataagttattttcataagctctctcaaatag 43808658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 621
Target Start/End: Complemental strand, 1494475 - 1494419
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| ||||||||  |||||||||||||||||| | ||||||||||||||| ||||    
T  1494475 ataagctaaaaacagtttatggacatgtcataagctgttttcataagctctctcaaa 1494419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 580 - 624
Target Start/End: Complemental strand, 1742046 - 1742002
Alignment:
Q  580 cttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||| |||||||||||||| ||| |||||||||||||||||||    
T  1742046 cttatgcacatgtcataagttgtttccataagctctcccaaatag 1742002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 565 - 621
Target Start/End: Original strand, 11063529 - 11063585
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    ||||| |||||||||||||||||||||||||||  | ||| |||||||||| |||||    
T  11063529 ataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaa 11063585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 578 - 624
Target Start/End: Original strand, 3673862 - 3673908
Alignment:
Q  578 aacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||||| ||||||||||||||  |||||||||||||||| |||||    
T  3673862 aacttatgcacatgtcataagttgctttcataagctctccctaatag 3673908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 571 - 621
Target Start/End: Original strand, 4550794 - 4550844
Alignment:
Q  571 taaaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||| | |||||| |||||||||||||| ||| ||||||||||||||||    
T  4550794 taaaaatagcttatgaacatgtcataagttgtttccataagctctcccaaa 4550844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 440 - 478
Target Start/End: Original strand, 9477860 - 9477898
Alignment:
Q  440 tgtttcgataaacaacttaattgagtgtttatagcataa 478  Q
    ||||| |||||||||||||||| ||||||||||||||||    
T  9477860 tgtttggataaacaacttaattaagtgtttatagcataa 9477898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 558 - 624
Target Start/End: Original strand, 29430792 - 29430858
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataagctctcccaaatag 624  Q
    |||||| ||||| | ||| || || |||||||||||||||| |||||||||||| ||| ||||||||    
T  29430792 tatagagataagcttaaagcagctaatggacatgtcataagctattttcataagttcttccaaatag 29430858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 573 - 614
Target Start/End: Complemental strand, 30538194 - 30538153
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctc 614  Q
    |||||||||||||||||||||||||||| |||  ||||||||    
T  30538194 aaaacaacttatggacatgtcataagttgtttctataagctc 30538153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 565 - 610
Target Start/End: Original strand, 38633 - 38678
Alignment:
Q  565 ataaggtaaaaacaacttatggacatgtcataagttattttcataa 610  Q
    ||||| || ||||||||||||||||||||||||||||||| |||||    
T  38633 ataagttagaaacaacttatggacatgtcataagttatttccataa 38678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 621
Target Start/End: Original strand, 27625 - 27673
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctcccaaa 621  Q
    |||||||||||| | ||||||||||| ||||| ||||||||||||||||    
T  27625 aaaacaacttatagccatgtcataagctatttccataagctctcccaaa 27673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 616
Target Start/End: Complemental strand, 12725 - 12682
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataagctctc 616  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||    
T  12725 aaaacaacttatggacatgtcataagttgtttccataaggtctc 12682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 573 - 611
Target Start/End: Complemental strand, 51973 - 51935
Alignment:
Q  573 aaaacaacttatggacatgtcataagttattttcataag 611  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  51973 aaaacaacttatggacatgtcataaattatttccataag 51935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 611
Target Start/End: Original strand, 4993 - 5046
Alignment:
Q  558 tatagatataaggtaaaaacaacttatggacatgtcataagttattttcataag 611  Q
    |||||| ||||| ||||| || ||||||||||||||||||| | ||||||||||    
T  4993 tatagaaataagctaaaatcagcttatggacatgtcataagctgttttcataag 5046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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