View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13435_low_2 (Length: 501)
Name: NF13435_low_2
Description: NF13435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13435_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 12 - 485
Target Start/End: Complemental strand, 29769371 - 29768898
Alignment:
| Q |
12 |
atgaacaacgaacctattgaggcgttctttaacagcggagagaagcttataattatcttgatcatttgtagcgagtgcttttttaacgacgagttcacga |
111 |
Q |
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| T |
29769371 |
atgaacaacgaacctattgaggcgttctttaacggcggagagaagcttataattatcttgatcatttgtagcgagtgcttttttaacgacgagttcacga |
29769272 |
T |
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| Q |
112 |
ttaaaccgattcaattttctcacatcgactaaattctcggcggcattttcctttgaaggttgacgggaagatgaagcacggaggacggcaaagttgatgc |
211 |
Q |
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| T |
29769271 |
ttaaaccgattcaattttctcacatcgactaaattctcgccggcattttcctttgaaggttgacgggaagatgaagcacggaggacggcgaagttgatgc |
29769172 |
T |
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| Q |
212 |
gtttctgcgacggtaaacgtgaaagcgccgcccaatgaagctcctcttcgtcttcctccacccattctgcattcgacgctctcgcaaaactctcgcttcc |
311 |
Q |
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| T |
29769171 |
gtttctgcgacggtaaacgtgaaagcgccgcccaatgaagctcctcttcgtcttcctccacccattctgcattcgacgctctcgcaaaactctcgcttcc |
29769072 |
T |
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| Q |
312 |
gattgatccgatttcaaagtactcgcttccatcggaagctgccatttttgttttctctctctaacggattttgatttcgcttctgagaagaagaatgaga |
411 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29769071 |
gattgatccgatttcgaagtactcgcttccatcggaagctgccatttttgttttctctctctaacggattttgatttcgcttctgagaagaagaatgaga |
29768972 |
T |
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| Q |
412 |
gagtgagtgtatgtttgagtttttatgcttctgatggaatgaacggtggagggtggtgtgagatgacggaaatg |
485 |
Q |
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||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29768971 |
gagcgagtgtatgtttaagtttttatgcttctgatggaatgaacggtggagggtggtatgagatgacggaaatg |
29768898 |
T |
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