View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13435_low_3 (Length: 410)
Name: NF13435_low_3
Description: NF13435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13435_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 8 - 395
Target Start/End: Original strand, 14085064 - 14085454
Alignment:
| Q |
8 |
tagcagcacagaaagaatatttgttaacctgttnnnnnnnnntaaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagc |
107 |
Q |
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| T |
14085064 |
tagcatcacagaaagaatatttgttaacctgttaaaaaaaaataaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagc |
14085163 |
T |
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| Q |
108 |
aaactaaaatcaaagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagt |
204 |
Q |
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| T |
14085164 |
aaactaaaatcaaagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaaaaatgctaaaccaatattaccctaaaagagt |
14085263 |
T |
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| Q |
205 |
aaaagaattaccttcatgtttttggacaaacattcatatgtttaagcatgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaa |
304 |
Q |
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| T |
14085264 |
aaaagaatcaccttcatgtttttggacaaacattcatatgtttaagcatgttgttagtttgatggctagaactatttgacgcaaaagaagcaaaacagaa |
14085363 |
T |
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| Q |
305 |
gttacaaaatgtggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagtttt |
395 |
Q |
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| T |
14085364 |
gttacaaaattcggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagtttt |
14085454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 55 - 395
Target Start/End: Complemental strand, 12190254 - 12189921
Alignment:
| Q |
55 |
aaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatcaaagacaactatcaaaacagagtaaacatagactaa |
154 |
Q |
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| T |
12190254 |
aaaatatacattagta-ctaataaatcaaagccacaaaatataacacta--gcaaactaacatcaaagacatctaccaaaatagagttaaaatagactaa |
12190158 |
T |
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| Q |
155 |
atcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagtaaaagaattaccttcatgtttttggacaaacattcatatgtttaagc |
251 |
Q |
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|||||||||||||||| || || | ||||| ||| | |||| | | | ||||| || |||||||||||||||||||||| |||| ||||||||| |
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| T |
12190157 |
atcaaatacaaagttacaataaaattactaaatcaaca-taactcagagtaataaaaaaactaccttcatgtttttggacaaatcatcatgtgtttaagc |
12190059 |
T |
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| Q |
252 |
atgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaatgtggcgtatgcgtctcttttcttcgtaaaatgtctcc |
351 |
Q |
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| T |
12190058 |
atgttgttagttcgatggttggaagcatttgaaacaaaagaagtgaagcaatagttacaaaa---ggc---agtgtcttttttcttcataaaatgtctcc |
12189965 |
T |
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| Q |
352 |
aagccattgaaggatgtctatcatgttttcttttctttagtttt |
395 |
Q |
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| T |
12189964 |
aaaccattgaaggaggtctagcaggttttcttttctttagtttt |
12189921 |
T |
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