View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13435_low_7 (Length: 320)
Name: NF13435_low_7
Description: NF13435
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13435_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 34388191 - 34388491
Alignment:
| Q |
1 |
tggcggaatgtgttgattgttcgacatcttccagaaagccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaatttgttgca |
100 |
Q |
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| T |
34388191 |
tggcggaatgtgttgattgttcgacatcttccagaaagccgctgtcacaatcgggacatattggcatccctagcctccataccctaacaaatttgttgca |
34388290 |
T |
|
| Q |
101 |
cctataacaccaatgtgaagacatctacctatagatttgaattgatgcttttttaatccttatatagaaataagaaaaattccatgcaaccacacaattg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
34388291 |
cctataacaccaatgtgaagacatctacctatagatttgaattgatgcttttttaatccttatatagaaataagaaaaattccatgcaaccccacaattg |
34388390 |
T |
|
| Q |
201 |
aaagtttgattagagnnnnnnnnnnnnnnnnnnnnntgagattcaaaatcttaaggcttcaaatttcaatattgttgcaatgtgagattggaaaaactat |
300 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34388391 |
aaagtttgattagagaaaaagaaaagaaacaaaaaatgagattcaaaatcttaaggcttcaaatttcaatattgttgcaatgtgagattagaaaaactat |
34388490 |
T |
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| Q |
301 |
g |
301 |
Q |
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| |
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| T |
34388491 |
g |
34388491 |
T |
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