View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_high_1 (Length: 507)
Name: NF13436_high_1
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 428; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 2 - 489
Target Start/End: Original strand, 34742448 - 34742935
Alignment:
| Q |
2 |
catcataaggatgaaaaatatgtgtatattacctttaaggcgtaaccatgcatgcatcaactcatgggcaagtatagcacccgttagtaacctgcatgcc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34742448 |
catcataaggatgaaaaatatgtgtatattacctttaaggcgtaaccatgcatgcatcaactcatgggctagtatagcacccgttagtaacctgcatgcc |
34742547 |
T |
|
| Q |
102 |
ataaaaatatcaggtaaaaacatttcaattttacggataattttaggatatcgtcgattttggagatcaaattactgaacctgttctatttcaagcacta |
201 |
Q |
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| T |
34742548 |
ataaaaatatcaggtaaaaacatttcaattttacggataattttaggatatcgtcgattttggtgatcaaattactgaacctgttctatttcaagcacta |
34742647 |
T |
|
| Q |
202 |
aattgatgattcactaaatggaataatgtatgaactacaattttttcataaggtaatttctgaggggtcaaaaagctgagtttccaatgtccatagttac |
301 |
Q |
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||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
34742648 |
aattgatgattcactaaatggaaaaatttatgaactacaattttttcataaggtaatttctgaggggtcaaaaagccaagtttccactgtccatagttac |
34742747 |
T |
|
| Q |
302 |
cttggtagaccatatagaacaagaattgctgtaacttcacattttcttattagcttttgaggttgagttctcatgcctataaatctatggcctccaattc |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||| |
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| T |
34742748 |
cttggtagaccatatagaacaagaattgctgtaacttcacattttcttatcagcttttgaggttgagttctcatcccaataagtctatggcctccaattc |
34742847 |
T |
|
| Q |
402 |
ttggccttctatgtatctgaaacaacataaaatcagaaaatagttaacttatcaaacaaacaatttctaacttgttcatgatagcttc |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||||| |||| |
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| T |
34742848 |
ttggccttctatgtatctgaaacaacataaaatcagaaaatagttaaatgatcaaataaacaatttctaacttgttcatgataccttc |
34742935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 298 - 423
Target Start/End: Complemental strand, 31055878 - 31055753
Alignment:
| Q |
298 |
ttaccttggtagaccatatagaacaagaattgctgtaacttcacattttcttattagcttttgaggttgagttctcatgcctataaatctatggcctcca |
397 |
Q |
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|||||| || |||||||| ||||||||||| |||||||||||||||||||| || | ||||||||||||| ||| ||| ||||| |||| ||| |||||| |
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| T |
31055878 |
ttacctcggaagaccatagagaacaagaatagctgtaacttcacattttctaatcaacttttgaggttgacttcgcatccctattaatcgatgacctcca |
31055779 |
T |
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| Q |
398 |
attcttggccttctatgtatctgaaa |
423 |
Q |
| |
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||| ||| || |||||||| |||||| |
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| T |
31055778 |
atttttgaccatctatgtacctgaaa |
31055753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 27 - 97
Target Start/End: Complemental strand, 31056225 - 31056155
Alignment:
| Q |
27 |
atattacctttaaggcgtaaccatgcatgcatcaactcatgggcaagtatagcacccgttagtaacctgca |
97 |
Q |
| |
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|||| |||||||||||||||||| ||||||||||||| || ||||| |||||||| || ||||||||||| |
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| T |
31056225 |
atataacctttaaggcgtaaccaaccatgcatcaactcgtgtgcaaggatagcacctgtgagtaacctgca |
31056155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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