View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_high_2 (Length: 461)
Name: NF13436_high_2
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 158 - 434
Target Start/End: Complemental strand, 40614583 - 40614306
Alignment:
| Q |
158 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagnnnnnnntaaatgtggccaaaagggtgtgtgccttgtagaa |
257 |
Q |
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| T |
40614583 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagaaaaaaataaatgtggccaaaagggtgtg--ccttgtagaa |
40614486 |
T |
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| Q |
258 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaa---tacaagcaaatcaaat |
354 |
Q |
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| T |
40614485 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaatagtacaagcaaatcaaat |
40614386 |
T |
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| Q |
355 |
accatcaaacctaagtcccccaagaaagcaacgtatgctctcaattaaagactgagcacatggagatgcatttattttgg |
434 |
Q |
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| T |
40614385 |
accatcaaacctaagtaccccaagaaagcaacgtatgctctcaattaaagactgagcacatggagatgcatttattttgg |
40614306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 158 - 410
Target Start/End: Complemental strand, 40610622 - 40610375
Alignment:
| Q |
158 |
aataaataaatgtggcgaaacacctgtgacttgtcgaaggggaaaattatagagttgagnnnnnnntaaatgtggccaaaagggtgtgtgccttgtagaa |
257 |
Q |
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| T |
40610622 |
aataaataaatgtcgcgaaacacatgtgacttgtcgaaggggaaaattagagagttgagaaaaaaataaacgtggccaaaagg--gtgtgccttgtagaa |
40610525 |
T |
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| Q |
258 |
gaggaaaattataaaacctgctactaaaacaagaaattaccctcaaacccaaccgaaatagggataataaatctaatttaatacaagcaaatcaaatac- |
356 |
Q |
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| T |
40610524 |
ggggaaaattatacaacctgccactaaaataa-aaattaccctcaaacccaaccgaaacagggataataaatc-----taatacaagaaaatcaaatacc |
40610431 |
T |
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| Q |
357 |
--catcaaacctaagtcccccaagaaagcaacgtatgctctcaattaaagactgag |
410 |
Q |
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| T |
40610430 |
atcatcaaacctaagtaccccaagaaagcaacttaagctctcaattaaagactgag |
40610375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 6 - 82
Target Start/End: Complemental strand, 40614735 - 40614659
Alignment:
| Q |
6 |
agttgcagcggcgccgagacccaaagccaagcgtgctttcttggagaggatggatgctattgctttgctgcttatca |
82 |
Q |
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| T |
40614735 |
agttgcagcggcgccgagacccaaagccaagcgagctttcttggagacgatggatgctattgctttgctgcttatca |
40614659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 40610743 - 40610698
Alignment:
| Q |
34 |
aagcgtgctttcttggagaggatggatgctattgctttgctgctta |
79 |
Q |
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| T |
40610743 |
aagcgtgctttcttgaagaggttggatgcttttgcttggctgctta |
40610698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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