View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_high_5 (Length: 429)
Name: NF13436_high_5
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_high_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 26454241 - 26454653
Alignment:
| Q |
15 |
tcaaccgtgttccatgtttcgtgatacacacaactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
114 |
Q |
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| T |
26454241 |
tcaaccttgttccatgtttcgtgatacac--aactcattgcacacatcgcatattgccacttaattgtacactttatctttctttatggttgcgcgatgc |
26454338 |
T |
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| Q |
115 |
gtggctactagcacccgttcaacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
214 |
Q |
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| T |
26454339 |
gtggctcctagcacccgttcgacataaggcagtagctcgtattttctcaattcttcatctcttgttctatttctcatcaacaaaaggtatgtgctaacta |
26454438 |
T |
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| Q |
215 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccacatagttgtttgttttaggtgatttgttgtggttcaaggccttgtgcttta |
314 |
Q |
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| T |
26454439 |
tacatcaagaaatcacttgattgatcttataaaaagtgtagcatgaccccatagttgtttgttttaggtgatttgttgtggttcaaggccttgtgcttta |
26454538 |
T |
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| Q |
315 |
aattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgc |
414 |
Q |
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| T |
26454539 |
aattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacactctaaaatgtctcctaaattatgc |
26454638 |
T |
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| Q |
415 |
taaaaaatactatga |
429 |
Q |
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| T |
26454639 |
taaaaaatactatga |
26454653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 282 - 398
Target Start/End: Original strand, 24455280 - 24455396
Alignment:
| Q |
282 |
gtgatttgttgtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgc |
381 |
Q |
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| T |
24455280 |
gtgatttgacgtggttcaaggccttgtgcttcaaattactttcccatgaccatccattgaattagttacataaactcgattaaaaaaattgataacctgc |
24455379 |
T |
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| Q |
382 |
tagaaacactctaaaat |
398 |
Q |
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| T |
24455380 |
taaaaaaactctaaaat |
24455396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 13962373 - 13962245
Alignment:
| Q |
292 |
gtggttcaaggccttgtgctttaaattactatcacaagcccaaccattggattatttacataaatttgactaaaatgaattataacttgctagaaacact |
391 |
Q |
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| T |
13962373 |
gtggttcaaggccttgtgcttcgaatcattctctcatgctcatccattgaattatttgcataaactcgactaaaacaattgagaacttgctaaaaagact |
13962274 |
T |
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| Q |
392 |
ctaaaatgtctcctaaattatgctaaaaa |
420 |
Q |
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| T |
13962273 |
ctaaaataacacataaatgatgctaaaaa |
13962245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 43716728 - 43716684
Alignment:
| Q |
246 |
aaaagtgtagcatgaccacatagttgtttgttttaggtgatttgt |
290 |
Q |
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| T |
43716728 |
aaaagtatagcatgaccacatagttgtctcttttgggtgatttgt |
43716684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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