View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_low_10 (Length: 383)
Name: NF13436_low_10
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 23 - 379
Target Start/End: Complemental strand, 7383886 - 7383525
Alignment:
| Q |
23 |
tgttattcacaggtgagagcttctggacgagagtaattttgttttttaataagcacttctatgccatgtattcattccctctcacaaataatcaacgaaa |
122 |
Q |
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| T |
7383886 |
tgttattcacaggtgagagcttctggacgagagtaattttgttttttaataagcacttctatgccatgtattcattccctctcacaaataatcaacgaaa |
7383787 |
T |
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| Q |
123 |
tttttgtctattctctcctttttcttcttaggtggcactcttgaatattataaggttttgtttgaaaatggcaatgttttagcttacgccttacagtgaa |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7383786 |
tttttgtctattctctcctttttcttcttaggtggcactcttgaatattataaggttttgtttgaaaatggcaatgtttgagcttacgccttacagtgaa |
7383687 |
T |
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| Q |
223 |
tgatcttataaacttatgtgattaaaatagatttgtttgtc----nnnnnnnnnnttctgccaagagtttataaca-ttttttactgacttatatatann |
317 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7383686 |
tgatcttataaactcatgtgattaaaatagatttgtttgtcaaaaaaaaaaaaaattctgccaagagtttataacatttttttactgacttatatatttt |
7383587 |
T |
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| Q |
318 |
nnnnnnnataattgacttctaatagggtttgaaaatttatagcttacgaattacgatttctt |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7383586 |
tttttttataattgacttctaatagggtttgaaaatttatagcttacgaattacgatttctt |
7383525 |
T |
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