View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_low_11 (Length: 345)
Name: NF13436_low_11
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 5e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 169 - 326
Target Start/End: Complemental strand, 27562186 - 27562029
Alignment:
| Q |
169 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
268 |
Q |
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| T |
27562186 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
27562087 |
T |
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| Q |
269 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcc |
326 |
Q |
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| T |
27562086 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataatatgtacacacttcc |
27562029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 27562394 - 27562234
Alignment:
| Q |
10 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
109 |
Q |
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| T |
27562394 |
gcagagagagccatggttttgtctgtgttgaagaattcaattgaggaagccaaggttttattttttgcgatttctttccttctgtcattcatttgtcgat |
27562295 |
T |
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| Q |
110 |
tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
170 |
Q |
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| T |
27562294 |
tctgtctgagatatatgcttggctgatgtcatagatagtgaattctgatcgtctttctgag |
27562234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 170 - 326
Target Start/End: Complemental strand, 36669239 - 36669084
Alignment:
| Q |
170 |
gaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatct |
269 |
Q |
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| T |
36669239 |
gaacttcaggtttgtaaatttgaactatctgcaatggttttgtcattatttcttcagtaattgagatgcattgactc-agggttccatctaaaagtatct |
36669141 |
T |
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| Q |
270 |
tttcatgtatgtttatttccagaatgaactaaatgatgataa-tatgtacacacttcc |
326 |
Q |
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| T |
36669140 |
tttcatgtatgttta-ttccagaatgaactaaatgatgataagtatgtacgcacttcc |
36669084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 36669449 - 36669288
Alignment:
| Q |
10 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
109 |
Q |
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| T |
36669449 |
gcagagagagctatgggtttgtctgagttgaagaattcaattgaggaagtgaaggttttattttt-gtgatttctttccttctgtcattcatttgtcgat |
36669351 |
T |
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| Q |
110 |
tct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
170 |
Q |
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| T |
36669350 |
tctctgtctaagatttatgcttggctgatatcatagatagtgaatgctgatcgtctttctgag |
36669288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 7e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 26928930 - 26928772
Alignment:
| Q |
10 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgatttctttccttctgtcattcatttgtcgat |
109 |
Q |
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| T |
26928930 |
gcagagagagccattactttgtccgacttgaaaaattcaattgaggaagccaaggttttattttttgtgatttctttccttctctcattcatttgtcgat |
26928831 |
T |
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| Q |
110 |
--tctgtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttc |
166 |
Q |
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| T |
26928830 |
tctctgtctaagatatatgcttggctgatgtcacagatagtgaatgatgatcgtctttc |
26928772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 284
Target Start/End: Complemental strand, 26928703 - 26928621
Alignment:
| Q |
202 |
aatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatcttttcatgtatgttta |
284 |
Q |
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|||| ||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| |||| |||| |||||| |
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| T |
26928703 |
aatggttttgtcattatttcttgagtaatttagatgcatatactctagggttccatgtaaaagtatatttttatgtgtgttta |
26928621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 169 - 311
Target Start/End: Complemental strand, 29411725 - 29411587
Alignment:
| Q |
169 |
agaacttcaggtttgtaaatttgagctatctgcaatgattttgtcattatttcttgagtaaatgagatgcatttactctagggttccatgtaaaagtatc |
268 |
Q |
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|||||||||||||||| |||||||||||||||||||| | || |||||||||||||||||| ||| | |||| | | |||||||||||||||||||||| |
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| T |
29411725 |
agaacttcaggtttgtcaatttgagctatctgcaatggtgttatcattatttcttgagtaattgaaacacattcattatagggttccatgtaaaagtatc |
29411626 |
T |
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| Q |
269 |
ttttcatgtatgtttatttccagaatgaactaaatgatgataa |
311 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |
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| T |
29411625 |
ttttc----gtgtttatttccagaatgaactaaatgatgataa |
29411587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 170
Target Start/End: Complemental strand, 29411938 - 29411773
Alignment:
| Q |
10 |
gcagagagagccatgggtttgtctgtgttgaagaattcaattgaggaagccagggttttgttttttgcgattt-ctttccttctgtcattcattt--gtc |
106 |
Q |
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| T |
29411938 |
gcagatagggccatgggtttgtccgagttgaagcactcaattgaggaagccaaggtttaactttttgtgattttctttccttccaccattcatttttgtc |
29411839 |
T |
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| Q |
107 |
gattct--gtatgagatatatgcttcgctgatgtcatagatagtgaatgctgatcgtctttctgag |
170 |
Q |
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| T |
29411838 |
gattctttgtctaagatgtatgtttggctgatgtcatagatcgtgaatgctgatcgtctttctgag |
29411773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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