View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13436_low_13 (Length: 331)

Name: NF13436_low_13
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13436_low_13
NF13436_low_13
[»] chr7 (1 HSPs)
chr7 (1-313)||(37960448-37960760)
[»] scaffold0534 (2 HSPs)
scaffold0534 (1-170)||(9248-9426)
scaffold0534 (234-284)||(9519-9569)
[»] chr8 (2 HSPs)
chr8 (1-170)||(17231271-17231449)
chr8 (234-284)||(17231542-17231592)
[»] chr2 (2 HSPs)
chr2 (1-170)||(28049993-28050171)
chr2 (234-284)||(28050264-28050314)
[»] chr1 (2 HSPs)
chr1 (1-170)||(19851687-19851865)
chr1 (234-284)||(19851958-19852008)
[»] chr5 (3 HSPs)
chr5 (234-313)||(12633885-12633964)
chr5 (72-170)||(12634057-12634164)
chr5 (179-215)||(12633975-12634011)
[»] scaffold0599 (1 HSPs)
scaffold0599 (72-110)||(3496-3534)
[»] chr3 (1 HSPs)
chr3 (72-110)||(11911802-11911840)
[»] scaffold0042 (2 HSPs)
scaffold0042 (12-79)||(11114-11181)
scaffold0042 (72-110)||(11065-11103)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 37960448 - 37960760
Alignment:
Q  1 ctaggactgcttttgtagaccagttcaataaatgcattaatgaagaaaactactcaaagaagtaaacaaaatatctttctaacaattattgtgtatactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37960448 ctaggactgcttttgtagaccagttcaataaatgcattaatgaagaaaactactcaaagaagtaaacaaaatatctttctaactattattgtgtatactt 37960547  T
Q  101 attaatgtgtgtcttaaaaagtctaattcatgaaattagtagtgaccatatatcaagcatatctagtaatgttatttcaaatttaaccactgatgcaaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37960548 attaatgtgtgtcttaaaaagtctaattcatgaaattagtagttaccatatatcaagcatatctagtaatgttatttcaaatttaaccactgatgcaaca 37960647  T
Q  201 aaatgtgttttaaatttcaccactgatgcatcaaatttgttgcagggtgttagacaagaacaagagagaggagaaactcatggggattttgctgacaacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37960648 aaatgtgttttaaatttcaccactgatgcatcaaatttgttgcagggtgatagacaagaacaagagagaggagaaactcatggggattttgctgacaacc 37960747  T
Q  301 cttgatgaccttg 313  Q
    |||||||||||||    
T  37960748 cttgatgaccttg 37960760  T

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Target: scaffold0534 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0534
Description:

Target: scaffold0534; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 9248 - 9426
Alignment:
Q  1 ctaggactgcttttgtagaccagttcaataaatgcattaatgaagaaaactactcaaagaagtaaacaaaatatctttctaacaattattgtgtatactt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |  ||||||||| |||||||||||||||||||||||||| |||    
T  9248 ctaggaatgcttttgtagaccagttcaataaatgcattaatggaggaaactactcagacgagtaaacaacatatctttctaacaattattgtgtatgctt 9347  T
Q  101 attaatgtgtgtcttaaaa---------agtctaattcatgaaattagtagtgaccatatatcaagcatatctagtaat 170  Q
    ||||||| |||||||||||          |||||||||||||| |||||||| ||||||||||  ||||||||||||||    
T  9348 attaatgcgtgtcttaaaatttgagttgtgtctaattcatgaagttagtagttaccatatatctggcatatctagtaat 9426  T

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Target: scaffold0534; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 9519 - 9569
Alignment:
Q  234 aatttgttgcagggtgttagacaagaacaagagagaggagaaactcatggg 284  Q
    |||||||||||||| | ||||| |||||||||||||||| |||||||||||    
T  9519 aatttgttgcagggggctagacgagaacaagagagaggaaaaactcatggg 9569  T

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Target: chr8 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 17231271 - 17231449
Alignment:
Q  1 ctaggactgcttttgtagaccagttcaataaatgcattaatgaagaaaactactcaaagaagtaaacaaaatatctttctaacaattattgtgtatactt 100  Q
    |||||| |||||||||||||||||||||||||||||||| || || |||||||||| |  ||||||||| |||||||||||||||||||||||||| |||    
T  17231271 ctaggaatgcttttgtagaccagttcaataaatgcattattggaggaaactactcatacgagtaaacaacatatctttctaacaattattgtgtatgctt 17231370  T
Q  101 attaatgtgtgtcttaaaa---------agtctaattcatgaaattagtagtgaccatatatcaagcatatctagtaat 170  Q
    |||||||||||||||||||          |||||||||| ||| |||||||| |||||||||| |||||||||||||||    
T  17231371 attaatgtgtgtcttaaaatttgagttgtgtctaattcaagaagttagtagttaccatatatctagcatatctagtaat 17231449  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 17231542 - 17231592
Alignment:
Q  234 aatttgttgcagggtgttagacaagaacaagagagaggagaaactcatggg 284  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  17231542 aatttgttgcagggggttagacgagaacaagagagaggaaaaactcatggg 17231592  T

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Target: chr2 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 28049993 - 28050171
Alignment:
Q  1 ctaggactgcttttgtagaccagttcaataaatgcattaatgaagaaaactactcaaagaagtaaacaaaatatctttctaacaattattgtgtatactt 100  Q
    |||||| ||||||||||||||||||||||||||||||||||| || |||||||||| |  ||||||||| |||||||||||||||||||||||||| |||    
T  28049993 ctaggaatgcttttgtagaccagttcaataaatgcattaatggaggaaactactcagacgagtaaacaacatatctttctaacaattattgtgtatgctt 28050092  T
Q  101 attaatgtgtgtcttaaaa---------agtctaattcatgaaattagtagtgaccatatatcaagcatatctagtaat 170  Q
    ||||||| |||||||||||          |||||||||||||| |||||||| ||||||||||  ||||||||||||||    
T  28050093 attaatgcgtgtcttaaaatttgagttgtgtctaattcatgaagttagtagttaccatatatctggcatatctagtaat 28050171  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 28050264 - 28050314
Alignment:
Q  234 aatttgttgcagggtgttagacaagaacaagagagaggagaaactcatggg 284  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  28050264 aatttgttgcagggggttagacgagaacaagagagaggaaaaactcatggg 28050314  T

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Target: chr1 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 19851687 - 19851865
Alignment:
Q  1 ctaggactgcttttgtagaccagttcaataaatgcattaatgaagaaaactactcaaagaagtaaacaaaatatctttctaacaattattgtgtatactt 100  Q
    |||||| |||||||||||| |||||||||||||||||||||| || ||||||| || |  ||||||||| |||||||||||||||||||||||||| |||    
T  19851687 ctaggaatgcttttgtagatcagttcaataaatgcattaatggaggaaactacacagacgagtaaacaacatatctttctaacaattattgtgtatgctt 19851786  T
Q  101 attaatgtgtgtcttaaaa---------agtctaattcatgaaattagtagtgaccatatatcaagcatatctagtaat 170  Q
    |||||||||||||||||||         ||||||||||||||| |||||||| ||||||||||  ||||||||||||||    
T  19851787 attaatgtgtgtcttaaaatttgagttgagtctaattcatgaagttagtagttaccatatatctggcatatctagtaat 19851865  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 19851958 - 19852008
Alignment:
Q  234 aatttgttgcagggtgttagacaagaacaagagagaggagaaactcatggg 284  Q
    |||||||||||||| ||||||| |||||||||||||||| |||||||||||    
T  19851958 aatttgttgcagggggttagacgagaacaagagagaggaaaaactcatggg 19852008  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 234 - 313
Target Start/End: Complemental strand, 12633964 - 12633885
Alignment:
Q  234 aatttgttgcagggtgttagacaagaacaagagagaggagaaactcatggggattttgctgacaacccttgatgaccttg 313  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  12633964 aatttgttgcagggggttagacaagaacaagagagaggagaaactcatgggaattttgctgacaacccttgattaccttg 12633885  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 72 - 170
Target Start/End: Complemental strand, 12634164 - 12634057
Alignment:
Q  72 tatctttctaacaattattgtgtatacttattaatgtgtgtcttaaaa---------agtctaattcatgaaattagtagtgaccatatatcaagcatat 162  Q
    |||||||| |||||||||| |||||||||||||||| |||||||| ||         ||||||||||||||| |||||||| ||||||||||  ||||||    
T  12634164 tatctttcgaacaattattatgtatacttattaatgagtgtcttagaatttgagttgagtctaattcatgaagttagtagttaccatatatcgggcatat 12634065  T
Q  163 ctagtaat 170  Q
    ||||||||    
T  12634064 ctagtaat 12634057  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 12634011 - 12633975
Alignment:
Q  179 aaatttaaccactgatgcaacaaaatgtgttttaaat 215  Q
    |||||| ||||||||||||||||||||||||||||||    
T  12634011 aaatttcaccactgatgcaacaaaatgtgttttaaat 12633975  T

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Target: scaffold0599 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 3496 - 3534
Alignment:
Q  72 tatctttctaacaattattgtgtatacttattaatgtgt 110  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  3496 tatctttctaacaattattgtgtatgcttattaatgtgt 3534  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 11911802 - 11911840
Alignment:
Q  72 tatctttctaacaattattgtgtatacttattaatgtgt 110  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  11911802 tatctttctaacaattattgtgtatgcttattaatgtgt 11911840  T

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Target: scaffold0042 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 11181 - 11114
Alignment:
Q  12 tttgtagaccagttcaataaatgcattaatgaagaaaactactcaaagaagtaaacaaaatatctttc 79  Q
    |||||||| |||||||||||||||||||||| || |||||  ||| |  ||||||||| |||||||||    
T  11181 tttgtagatcagttcaataaatgcattaatggaggaaactgttcagacgagtaaacaacatatctttc 11114  T

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Target: scaffold0042; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 110
Target Start/End: Complemental strand, 11103 - 11065
Alignment:
Q  72 tatctttctaacaattattgtgtatacttattaatgtgt 110  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  11103 tatctttctaacaattattgtgtacgcttattaatgtgt 11065  T

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