View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_low_15 (Length: 298)
Name: NF13436_low_15
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 8 - 260
Target Start/End: Original strand, 39630170 - 39630424
Alignment:
| Q |
8 |
tgagatgaagcctagagcataccaaatatttttagaggtcgtataatctctaatacaatgaagaaggtttcttcagaagaggaacaacgaggatagatat |
107 |
Q |
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| T |
39630170 |
tgagatgaagcctagagcataccaaatatttttagaggtcgtataatctctaatacaatgaagaaggtttcttcagaagaggaacaacgaggatagatat |
39630269 |
T |
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| Q |
108 |
cgcttggagcaaggtttcagtggctta-gagggaaatgg--tatcgacaaagatgttaataaaagccattcaaacaagaaattttannnnnnnnatgaag |
204 |
Q |
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| T |
39630270 |
cgcttggagcaaggtttcagtggcttaggagggacatggtatatggacaaagatgttaataaaagccattcaaacaagaaatttta-tttttttatgaag |
39630368 |
T |
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| Q |
205 |
ttcgaggctcgaaatctaagaccatgagataaaggcaatacatgcacgaaatttta |
260 |
Q |
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| T |
39630369 |
ttcgaggctcgaaatctaagaccatgagataaaggcaatacatgcacgaaatttta |
39630424 |
T |
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