View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13436_low_3 (Length: 461)

Name: NF13436_low_3
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13436_low_3
NF13436_low_3
[»] chr2 (13 HSPs)
chr2 (1-457)||(8379394-8379850)
chr2 (1-329)||(23768037-23768365)
chr2 (1-329)||(23783706-23784034)
chr2 (1-324)||(30424736-30425059)
chr2 (1-324)||(30437024-30437347)
chr2 (118-327)||(30394880-30395089)
chr2 (1-324)||(30430769-30431092)
chr2 (1-323)||(30483758-30484080)
chr2 (1-324)||(30468835-30469158)
chr2 (102-324)||(30384430-30384652)
chr2 (1-324)||(30475797-30476120)
chr2 (191-278)||(30403917-30404004)
chr2 (380-443)||(8192490-8192553)
[»] chr5 (9 HSPs)
chr5 (44-323)||(41627756-41628035)
chr5 (379-419)||(1827693-1827733)
chr5 (379-419)||(27498894-27498934)
chr5 (376-407)||(12647731-12647762)
chr5 (380-443)||(40330628-40330691)
chr5 (379-452)||(25343233-25343306)
chr5 (379-419)||(12317313-12317353)
chr5 (379-443)||(23270661-23270725)
chr5 (379-411)||(24158311-24158343)
[»] chr8 (3 HSPs)
chr8 (145-323)||(15852260-15852438)
chr8 (377-445)||(3794787-3794855)
chr8 (379-441)||(3403643-3403705)
[»] chr1 (7 HSPs)
chr1 (379-441)||(43770105-43770167)
chr1 (379-441)||(1138573-1138635)
chr1 (379-452)||(40802197-40802270)
chr1 (379-423)||(7946838-7946882)
chr1 (380-443)||(24216973-24217036)
chr1 (379-419)||(15059565-15059605)
chr1 (379-419)||(47091684-47091724)
[»] chr7 (4 HSPs)
chr7 (383-443)||(1469114-1469174)
chr7 (379-452)||(7262215-7262288)
chr7 (378-443)||(40332096-40332161)
chr7 (379-411)||(39145823-39145855)
[»] chr4 (5 HSPs)
chr4 (379-452)||(41621726-41621799)
chr4 (401-443)||(13017745-13017787)
chr4 (379-443)||(13771622-13771686)
chr4 (379-411)||(22625241-22625273)
chr4 (379-419)||(52983613-52983653)
[»] chr3 (4 HSPs)
chr3 (379-452)||(4252526-4252599)
chr3 (375-452)||(50731363-50731440)
chr3 (375-452)||(50781414-50781491)
chr3 (397-452)||(26535050-26535105)
[»] scaffold0160 (1 HSPs)
scaffold0160 (396-441)||(29283-29328)
[»] chr6 (1 HSPs)
chr6 (379-443)||(33499468-33499532)


Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 8379850 - 8379394
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379850 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 8379751  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379750 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 8379651  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8379650 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaaaaaaccagactatgaaggacta 8379551  T
Q  301 aataaacttaagattgtaagtattttaatgtattagctgtatcttcttgtatttttcctataaaaattgcatcttttgaacccatttgaggttgacctag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||    
T  8379550 aataaacttaagattgtaagtattttaatgtattagctgtatcttcttgtatttttcctttaaaaattgcatcttttgaacccatttgaggttgacttag 8379451  T
Q  401 tggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgattgattc 457  Q
    ||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||    
T  8379450 tggttggcttgaaatcttgaagtctattcatctcaaggtctcaggtttgattgattc 8379394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 23768037 - 23768365
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||| || ||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| |||||| ||||||||| ||| ||||    
T  23768037 attaacaagagggagaaagcaataaaggcaggtgaagccactgagaatgacttattaggtctcctcctagagtcgaaccacaaagaaattaaagaacatg 23768136  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
    |||||  ||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| |  | |||||||||||  ||||||||  | ||||||||||    
T  23768137 gaaacttcaagaatatgggattgagtcttgaagaagtagtcggggaatgcatgttattccatattgcagggcaagagactacttcagatttgcttgtttg 23768236  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    ||| ||| | |||||||||||| |||| |||||||||||||||||  || ||||||||||| | |||||||||||  | |||||||||| ||| ||||||    
T  23768237 gacgatggtgttgttgagtaggcacccagattggcaagaacgtgcccggaaggaagtattagagatatttggcaatgaaaaaccagactttgatggacta 23768336  T
Q  301 aataaacttaagattgtaagtattttaat 329  Q
    |||||||||||||||||||||||||||||    
T  23768337 aataaacttaagattgtaagtattttaat 23768365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 23784034 - 23783706
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||| || || |||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||| ||||||  |||||||| ||| ||||    
T  23784034 attaacaagagggaaaaagcaattaaggcaggtgaagccactgagaatgacttattaggtctcctcctagagtcgaaccacagagaaattaaagaacatg 23783935  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
    |||||  ||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| |  | |||||||||||  ||||||||  | ||||||||||    
T  23783934 gaaacgtcaagaatatgggattgagtcttgaagaagtagtcggggaatgcaggttattccatgttgcagggcaagagactacttcagatttgcttgtttg 23783835  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    ||| ||| | ||||||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||||||||  | ||||| |||| ||| ||||||    
T  23783834 gacgatggtgttgttgagtaggtaccctgattggcaagaacgtgcaaggaaggaagtattagagatatttggcaatgaaaaacccgactttgatggacta 23783735  T
Q  301 aataaacttaagattgtaagtattttaat 329  Q
    |||||||||||||||||||||||||||||    
T  23783734 aataaacttaagattgtaagtattttaat 23783706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 30424736 - 30425059
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||| ||||| | |||| | |||||||||||||| ||| || ||||||| |||||| | ||| |||||||||| ||| |||||||   ||| || |    
T  30424736 attaacaagagagaaagagcactaaaggcaggtgaagccactaaggatgacttattaggtatacttttagagtcaaatcacaaagaaatggaagaacacg 30424835  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
    | ||||| |||||| | |||||||||||||| |||||| | | |||||||||| | |||||||| ||||| |||||  | |||||   | ||||||||||    
T  30424836 gcaacaataagaatgttggaatgagtcttgatgatgtaatagaggaatgcaagctcttctactttgcaggccaagagaccacttctgttttgcttgtttg 30424935  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    ||||||| | ||||||||||||||||||||||||||||||||||| ||||| |||||||||||| | ||||||||||| ||||| |||| ||| || |||    
T  30424936 gacaatggtgttgttgagtaggtaccctgattggcaagaacgtgcaagggaagaagtattacaagtttttggcaacaataaacctgactttgacgggcta 30425035  T
Q  301 aataaacttaagattgtaagtatt 324  Q
    | | | |||||||| |||||||||    
T  30425036 agtcatcttaagatcgtaagtatt 30425059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 30437024 - 30437347
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||  ||||||| |||| | | |||||||||||||||  || |||| ||||||||| | ||| |||||||||| ||| |||||||   ||| ||||    
T  30437024 attaacacgagagagagagcactaatggcaggtgaagcaacaaaggatgatttgttaggtatacttttagagtcaaatcacaaagaaatggaagaacatg 30437123  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
      ||||| |||||| | |||||||||||||| |||||| | | |||||||||| |||||||||| |||||   |||  | |||||   | ||||||||||    
T  30437124 acaacaataagaatgttggaatgagtcttgacgatgtaatagaggaatgcaagctattctactttgcaggtgcagagacaacttctgttttgcttgtttg 30437223  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    ||||||  | |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| ||||| || | ||| || |||    
T  30437224 gacaatagtgttgttgagtaggtaccctgattggcaagcacgtgcaagggaggaagtattacaagtatttggcaacaataaacccgattttgatgggcta 30437323  T
Q  301 aataaacttaagattgtaagtatt 324  Q
    | | | ||||||||||||||||||    
T  30437324 agtcatcttaagattgtaagtatt 30437347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 118 - 327
Target Start/End: Original strand, 30394880 - 30395089
Alignment:
Q  118 ggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatattgttga 217  Q
    ||||||||||||||  ||||||| | |||||||||||| ||| | || |||||||||||| |||||||   | |||||||||||||||||||||||||||    
T  30394880 ggaatgagtcttgatcatgtagtcgaggaatgcaagttgttccattttgcagggcaagaaactacttcggttttgcttgtttggacaatgatattgttga 30394979  T
Q  218 gtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgt 317  Q
    ||||||||||||||||||||  |||||||||||||||||| |||||  | ||||||||||| |||||||| | ||| || |||||||| || ||||||||    
T  30394980 gtaggtaccctgattggcaaacacgtgctagggaggaagtgttacatgtctttggcaacaaaaaaccagattttgatgggctaaataacctaaagattgt 30395079  T
Q  318 aagtatttta 327  Q
    ||||| ||||    
T  30395080 aagtaattta 30395089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 30430769 - 30431092
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||| ||||| | |||| | || |||||| |||||||| || ||||||| |||||| | ||| |||||||||| ||  |||||||   ||| || |    
T  30430769 attaacaagagagaaagagcactaaaagcaggtaaagcaactaaggatgacttattaggtatacttttagagtcaaatcaaaaagaaatggaagaacaag 30430868  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
    | ||||| |||||| | |||||||||||||| |||||| | | |||||||||| | |||||||| ||||| |||||  | |||||   | ||||||||||    
T  30430869 gcaacaataagaatgttggaatgagtcttgatgatgtaatagaggaatgcaagctcttctactttgcaggacaagagaccacttctgttttgcttgtttg 30430968  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    ||||||| | |||||||||||||| || ||||||||||||||||| ||||| |||||||||||| ||||||||||||| |||||||| | ||| || |||    
T  30430969 gacaatggtgttgttgagtaggtaaccagattggcaagaacgtgcaagggaagaagtattacaagtatttggcaacaataaaccagaatttgacgggcta 30431068  T
Q  301 aataaacttaagattgtaagtatt 324  Q
    | | | |||||||| |||||||||    
T  30431069 agtcatcttaagatcgtaagtatt 30431092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 30483758 - 30484080
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||| ||||| | || ||| |||||||||||||| ||| |||||||||| |||||| ||||||| |||||||| ||| | ||||||| |||| |      
T  30483758 attaacaagagagaaagagaaataaaggcaggtgaagccactaagaatgacttattaggtattcttcttgagtcaaatcacaaggaaattaaagataaca 30483857  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
      ||||| |||||| | ||||||| |||||| |||||| |   |||||||||| |||||||| | |||||| ||||| | ||||||  | ||||||||||    
T  30483858 acaacaataagaatgttggaatgaatcttgatgatgtaatcaaggaatgcaagctattctaccttgcaggggaagaaaccacttcagttttgcttgtttg 30483957  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    ||||||  |||| ||||||||| ||||| ||||||||| |||||| || ||||||||  ||||| | |||||||||||  ||||||| | ||||||||||    
T  30483958 gacaattgtattattgagtaggcaccctaattggcaagcacgtgcaagagaggaagtgctacaagtttttggcaacaaacaaccagattttgaaggacta 30484057  T
Q  301 aataaacttaagattgtaagtat 323  Q
    ||  | |||||||||||||||||    
T  30484058 aaccatcttaagattgtaagtat 30484080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 30468835 - 30469158
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||| ||||| | |||| | |||||||||||||||||| || |||| ||||||||| | ||| |||||||||| ||| |||||||   ||| ||||    
T  30468835 attaacaacagagaaagagcactaaaggcaggtgaagcaactaaggatgatttgttaggtatacttttagagtcaaatcacaaagaaatggaagaacatg 30468934  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
    | ||||| ||| || | |||||||||||||| |||||  | | |||||||||| |||||||||| ||||| |||||  | |||||   | ||||||||||    
T  30468935 gcaacaataaggatgtcggaatgagtcttgatgatgtgatagaggaatgcaagctattctactttgcaggccaagagaccacttctgttttgcttgtttg 30469034  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    ||||||| | || |||||||||||||| ||||||||||  ||||| ||||| |||||||||||  | ||||||||||| ||||| || | ||| || |||    
T  30469035 gacaatggtgttattgagtaggtaccccgattggcaagcgcgtgcaagggaagaagtattacaggtctttggcaacaataaacctgattttgacgggcta 30469134  T
Q  301 aataaacttaagattgtaagtatt 324  Q
    | | | ||||||||||||||||||    
T  30469135 agtcatcttaagattgtaagtatt 30469158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 102 - 324
Target Start/End: Original strand, 30384430 - 30384652
Alignment:
Q  102 aaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttgg 201  Q
    |||||||||| || |||||||||||||||| |||||||| | |||||||||||| ||| |||| ||||| |||||  |||||||   | |||||||||||    
T  30384430 aaacaacaaggatgtgggaatgagtcttgatgatgtagtcgaggaatgcaagttgttccactttgcaggtcaagagactacttcggttttgcttgtttgg 30384529  T
Q  202 acaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaa 301  Q
    ||||||||||| ||||||||||||||||||||||||   ||||| ||||||||||| |||||  | ||||||||||  |||||||| | ||| || ||||    
T  30384530 acaatgatattattgagtaggtaccctgattggcaaacccgtgcaagggaggaagtgttacatgtctttggcaacagaaaaccagattttgatgggctaa 30384629  T
Q  302 ataaacttaagattgtaagtatt 324  Q
    |||| || ||||| |||||||||    
T  30384630 ataacctaaagatcgtaagtatt 30384652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 30475797 - 30476120
Alignment:
Q  1 attaacaaaagagagaaagcaatgaaggcaggtgaagcaactgagaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatg 100  Q
    |||||||| |||||||  ||| | ||||| |||||||||||| || |||| || |||||| | ||| | ||||  || ||| |||||||   ||| || |    
T  30475797 attaacaagagagagatcgcactaaaggcgggtgaagcaactaaggatgatttattaggtatacttttggagttgaatcacaaagaaatggaagaacacg 30475896  T
Q  101 gaaacaacaagaatatgggaatgagtcttgaagatgtagtgggggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttg 200  Q
      ||||| ||| || | |||||||||||||| |||||| | |  ||||||||| |||||||||| |||||||||||  | |||||   | ||||||||||    
T  30475897 acaacaataaggatgtcggaatgagtcttgacgatgtaatagaagaatgcaagctattctactttgcagggcaagagaccacttctgttttgcttgtttg 30475996  T
Q  201 gacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggacta 300  Q
    | ||||||| |||||||||||||| |||||||||||||  ||||| |||||||||||||| ||| | || ||||| || |||||||| | ||| ||||||    
T  30475997 ggcaatgatgttgttgagtaggtatcctgattggcaagctcgtgcaagggaggaagtattgcaagtcttcggcaataaaaaaccagattttgatggacta 30476096  T
Q  301 aataaacttaagattgtaagtatt 324  Q
    ||  ||||||||||||||||||||    
T  30476097 aaccaacttaagattgtaagtatt 30476120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 191 - 278
Target Start/End: Original strand, 30403917 - 30404004
Alignment:
Q  191 tgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtgctagggaggaagtattacaaatatttggcaacaa 278  Q
    ||||||||||||||||||||||||||||||| || ||||||||||||| ||| ||||| |||||||| || ||| | |||||| ||||    
T  30403917 tgcttgtttggacaatgatattgttgagtagatatcctgattggcaagcacgagctagagaggaagttttgcaagtttttggcgacaa 30404004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Complemental strand, 8192553 - 8192490
Alignment:
Q  380 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    ||||||||| ||||| ||||||||||||||||  |||||| ||| || || |||||||||||||    
T  8192553 acccatttggggttggcctagtggttggcttgggatcttggagtgtgctcctctcaaggtctca 8192490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 44 - 323
Target Start/End: Complemental strand, 41628035 - 41627756
Alignment:
Q  44 agaatgacttgttaggtcttcttctagagtcaaaccaccaagaaattagagatcatggaaacaacaagaatatgggaatgagtcttgaagatgtagtggg 143  Q
    ||||||| || |||||| ||||| ||||| |||||||| | ||||||| ||| ||||||||||||  |||| ||||||||| | ||||||||||| |       
T  41628035 agaatgatttattaggtattcttatagagacaaaccacaaggaaattaaagaacatggaaacaacgtgaatgtgggaatgaatattgaagatgtaattca 41627936  T
Q  144 ggaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgt 243  Q
    |||||||||||| |||||||| |||||||||||  ||||||||||| | ||||||||||||||| |||| ||||||||||||||||| ||||||| | |     
T  41627935 ggaatgcaagttgttctactttgcagggcaagagactacttcaactttacttgtttggacaatggtattattgagtaggtaccctgagtggcaagcaagg 41627836  T
Q  244 gctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtat 323  Q
    || |||||||||||||||||||| ||||||||||| |||||  | | ||| || ||||||||  | ||||||||||||||    
T  41627835 gcaagggaggaagtattacaaatctttggcaacaaaaaacctaattttgatgggctaaataacttgaagattgtaagtat 41627756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 1827733 - 1827693
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttg 419  Q
    |||||||||| ||||||||||||||||||||||| ||||||    
T  1827733 aacccatttggggttgacctagtggttggcttgagatcttg 1827693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 27498934 - 27498894
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttg 419  Q
    |||||||||| |||||||||||||||||||||| |||||||    
T  27498934 aacccatttggggttgacctagtggttggcttggaatcttg 27498894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 407
Target Start/End: Original strand, 12647731 - 12647762
Alignment:
Q  376 ttgaacccatttgaggttgacctagtggttgg 407  Q
    ||||||||||||||||||||||||||||||||    
T  12647731 ttgaacccatttgaggttgacctagtggttgg 12647762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 40330628 - 40330691
Alignment:
Q  380 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    ||||||||||||||| | |||||||| |||||| |||||| ||| || || |||||||||||||    
T  40330628 acccatttgaggttggcttagtggttagcttgagatcttggagtttgctcctctcaaggtctca 40330691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 25343233 - 25343306
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||||||||| ||||| ||||||||||| |||||||||||| | | || || | ||||||||||| | ||||||    
T  25343233 aacccatttggggttggcctagtggttgacttgaaatcttggattgtgctcttttcaaggtctcaagtttgatt 25343306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 12317353 - 12317313
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttg 419  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  12317353 aacccatttggggttggcctagtggttggcttggaatcttg 12317313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 23270725 - 23270661
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    |||||||||| ||||| ||||||||||||||||  |||||| ||| || |||||  |||||||||    
T  23270725 aacccatttggggttggcctagtggttggcttgggatcttggagtttgctcatccaaaggtctca 23270661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 24158343 - 24158311
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttg 411  Q
    |||||||||||||||||||||||| ||||||||    
T  24158343 aacccatttgaggttgacctagtgattggcttg 24158311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 145 - 323
Target Start/End: Complemental strand, 15852438 - 15852260
Alignment:
Q  145 gaatgcaagttattctacttggcagggcaagaatctacttcaactatgcttgtttggacaatgatattgttgagtaggtaccctgattggcaagaacgtg 244  Q
    |||||||| || || |||||||||||||||||  | ||||||| | |||| |||||||||||| | || ||  | ||||| ||||| |||||||||||||    
T  15852438 gaatgcaaattgttttacttggcagggcaagagaccacttcaagtttgctggtttggacaatggtgttattaggcaggtatcctgaatggcaagaacgtg 15852339  T
Q  245 ctagggaggaagtattacaaatatttggcaacaacaaaccagactatgaaggactaaataaacttaagattgtaagtat 323  Q
    | ||| ||||||| || ||| | ||||| ||| | || ||| |||  |||||||||| | ||||||| |||||| ||||    
T  15852338 caaggcaggaagttttgcaagtttttgggaaccaaaatccaaacttcgaaggactaagtcaacttaaaattgtacgtat 15852260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 445
Target Start/End: Original strand, 3794787 - 3794855
Alignment:
Q  377 tgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatg 445  Q
    |||| ||||||| |||||||||| ||||||||||   |||||||||| || || |||||||||||||||    
T  3794787 tgaatccatttgtggttgacctaatggttggcttaggatcttgaagtttgctcctctcaaggtctcatg 3794855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 3403705 - 3403643
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 441  Q
    |||||||||||||||| ||| | ||||||| ||| |||||| ||| || ||||||||||||||    
T  3403705 aacccatttgaggttggccttggggttggcctgagatcttggagtttgctcatctcaaggtct 3403643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 441
Target Start/End: Complemental strand, 43770167 - 43770105
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 441  Q
    |||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||| ||||    
T  43770167 aacccatttgtggttgatctagtggttggcttgaaatcttggagtttgttcatctcaaagtct 43770105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 379 - 441
Target Start/End: Original strand, 1138573 - 1138635
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 441  Q
    |||||||||| ||||||||||||||||||||||| |||||| ||| || || |||||||||||    
T  1138573 aacccatttggggttgacctagtggttggcttgagatcttggagtgtgctcctctcaaggtct 1138635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 40802270 - 40802197
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||||||||| ||||| | | ||||||||||||| || ||| ||| || |||||||||||||||||| ||||||    
T  40802270 aacccatttggggttggctttgtggttggcttgagatattggagtttgctcatctcaaggtctcatgtttgatt 40802197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 7946838 - 7946882
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagt 423  Q
    |||||||||| ||| ||||||||||||||||||| ||||||||||    
T  7946838 aacccatttggggtcgacctagtggttggcttgagatcttgaagt 7946882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 443
Target Start/End: Original strand, 24216973 - 24217036
Alignment:
Q  380 acccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    ||||||||| ||||||||||||||||| ||||  |||||| ||| || || |||||||||||||    
T  24216973 acccatttggggttgacctagtggttgacttgggatcttggagtgtgctcctctcaaggtctca 24217036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 15059605 - 15059565
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttg 419  Q
    |||||||||| ||||| |||||||||||||||| |||||||    
T  15059605 aacccatttggggttggcctagtggttggcttggaatcttg 15059565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 47091684 - 47091724
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttg 419  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  47091684 aacccatttggggttggcctagtggttggcttgagatcttg 47091724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 1469114 - 1469174
Alignment:
Q  383 catttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    |||||| ||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||    
T  1469114 catttggggttggcctagtggttgacttgaaatcttggagtttgttcatctcaaggtctca 1469174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 7262215 - 7262288
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||| ||||||||||||| ||||||||| ||||  |||||| ||| || || ||||||||||||| | ||||||    
T  7262215 aacctatttgaggttgacttagtggttgacttgtgatcttgtagtgtgatcctctcaaggtctcaagtttgatt 7262288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 40332096 - 40332161
Alignment:
Q  378 gaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    |||||||||||  ||||  ||||||||||||||||||||||| ||| || || ||| |||||||||    
T  40332096 gaacccatttggagttggtctagtggttggcttgaaatcttggagtttgctcctctaaaggtctca 40332161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 39145855 - 39145823
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttg 411  Q
    |||||||||||||||||||||||||||| ||||    
T  39145855 aacccatttgaggttgacctagtggttgacttg 39145823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 41621799 - 41621726
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||||||||| ||||| |||| |||||||||||| |||||| ||| || || ||||||||||||||| ||||||    
T  41621799 aacccatttggggttggcctaatggttggcttgagatcttggagtttgctcctctcaaggtctcatgtttgatt 41621726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 443
Target Start/End: Original strand, 13017745 - 13017787
Alignment:
Q  401 tggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||    
T  13017745 tggttggcttggaatcttgaagtgtgttcctctcaaggtctca 13017787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 443
Target Start/End: Complemental strand, 13771686 - 13771622
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    |||||||||| |||||  ||  |||||||||||  |||||||||| || ||||||||||||||||    
T  13771686 aacccatttggggttggtctgatggttggcttgggatcttgaagtttgctcatctcaaggtctca 13771622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 411
Target Start/End: Complemental strand, 22625273 - 22625241
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttg 411  Q
    |||||||||||||||| ||||||||||||||||    
T  22625273 aacccatttgaggttggcctagtggttggcttg 22625241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 52983613 - 52983653
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttg 419  Q
    |||||||||| ||||| ||||||||||||||||| ||||||    
T  52983613 aacccatttggggttggcctagtggttggcttgagatcttg 52983653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 452
Target Start/End: Complemental strand, 4252599 - 4252526
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||| || || ||||||||||||| | ||||||    
T  4252599 aacccatttggggttggcctagtggttggcttgagatcttggagtgtgctcctctcaaggtctcaagtttgatt 4252526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 452
Target Start/End: Complemental strand, 50731440 - 50731363
Alignment:
Q  375 tttgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||||| |||||||  || ||||||||||||| ||||| |||||||||| || || ||||||||||||| | ||||||    
T  50731440 tttgaatccatttggtgtcgacctagtggttgacttgagatcttgaagtgtgctcctctcaaggtctcaagtttgatt 50731363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 452
Target Start/End: Original strand, 50781414 - 50781491
Alignment:
Q  375 tttgaacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||||| |||||||  || ||||||||||||| ||||| |||||||||| || || ||||||||||||| | ||||||    
T  50781414 tttgaatccatttggtgtcgacctagtggttgacttgagatcttgaagtgtgctcctctcaaggtctcaagtttgatt 50781491  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 452
Target Start/End: Original strand, 26535050 - 26535105
Alignment:
Q  397 ctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctcatgcttgatt 452  Q
    |||||||||| ||||| || ||||||| ||||||||||||||| ||||| ||||||    
T  26535050 ctagtggttgacttgagattttgaagtgtgttcatctcaaggtttcatgtttgatt 26535105  T

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Target: scaffold0160 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 441
Target Start/End: Complemental strand, 29328 - 29283
Alignment:
Q  396 cctagtggttggcttgaaatcttgaagtctgttcatctcaaggtct 441  Q
    |||||||||||||||| ||||||||||| ||||| |||||||||||    
T  29328 cctagtggttggcttggaatcttgaagtgtgttcctctcaaggtct 29283  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 443
Target Start/End: Original strand, 33499468 - 33499532
Alignment:
Q  379 aacccatttgaggttgacctagtggttggcttgaaatcttgaagtctgttcatctcaaggtctca 443  Q
    |||||||||| ||||| ||| ||||||||||||  |||||| ||| || || |||||||||||||    
T  33499468 aacccatttggggttggcctggtggttggcttgggatcttggagtttgctcctctcaaggtctca 33499532  T

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