View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_low_6 (Length: 456)
Name: NF13436_low_6
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 48753886 - 48754098
Alignment:
| Q |
19 |
atatgatgatagtgacaagagaattcctgacatgacaatcatcaacaagcagcttggatggaatccaaagacttcacttgaagacctgcttgaatccaca |
118 |
Q |
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| T |
48753886 |
atatgatgatagtgacaagagaattcctgacatgaccatcatcaacaagcagcttggatggaatccaaagacttcacttgaagacctgcttgaatccaca |
48753985 |
T |
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| Q |
119 |
cttacctatcagcac-aagacatatgctgaagctgtcaaaaaagtcattgcacaacccattgcaagttaaaacaacaatgtcaatgtgccaagggtatta |
217 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
48753986 |
cttacctatcagcacaaagacatatgctgaagctgtcaaaaaagtcattgcacaacccattgcaagttaaaacaacaatggcaatgtgccaagggtatta |
48754085 |
T |
|
| Q |
218 |
gcataggatgaac |
230 |
Q |
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||||||||||||| |
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| T |
48754086 |
gcataggatgaac |
48754098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 49052521 - 49052694
Alignment:
| Q |
19 |
atatgatgatagtgacaagagaattcctgacatgacaatcatcaacaagcagcttggatggaatccaaagacttcacttgaagacctgcttgaatccaca |
118 |
Q |
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|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
49052521 |
atatgatgatagtgacaagagaattcctgatatgaccatcatcaacaagcagcttggatggaatccgaagacttcacttgaggacctgcttgaatccaca |
49052620 |
T |
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| Q |
119 |
cttacctatcagcacaagacatatgctgaagctgtcaaaaaagtcattgcacaacccattgcaagttaaaacaa |
192 |
Q |
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| T |
49052621 |
cttacctatcagcacaagacatatgctgaagctattaagaaagtcattgcacaaaccattgcaagttaaaacaa |
49052694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 342 - 444
Target Start/End: Original strand, 48754210 - 48754312
Alignment:
| Q |
342 |
ggttaaggtttgacagttcatatttatgataaagctttgttaggttgctctagcagaaatttgaattatgattctcttgtttgtattaactacatatgat |
441 |
Q |
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||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48754210 |
ggttaagttttgacagttcatatttatgataaggctttgttaggttgctctagcagaaatttgaattatgattctcttgtttgtattaactacatatgat |
48754309 |
T |
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| Q |
442 |
gat |
444 |
Q |
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||| |
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| T |
48754310 |
gat |
48754312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 20488268 - 20488155
Alignment:
| Q |
76 |
atggaatccaaagacttcacttgaagacctgcttgaatccacacttacctatcagcacaagacatatgctgaagctgtcaaaaaagtcattgcacaaccc |
175 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||| | || ||||||||||| ||||| |
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| T |
20488268 |
atggaatccaaagacttcactttgggacctgcttgaatccacacttacctatcagcacaggacatacgccgaagccattaagaaagtcattgctcaacca |
20488169 |
T |
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| Q |
176 |
attgcaagttaaaa |
189 |
Q |
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|||||||||||||| |
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| T |
20488168 |
attgcaagttaaaa |
20488155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 20488412 - 20488359
Alignment:
| Q |
19 |
atatgatgatagtgacaagagaattcctgacatgacaatcatcaacaagcagct |
72 |
Q |
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|||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
20488412 |
atatgatgatagtgacaagagaattcctgacatgaccataatcaacaagcagct |
20488359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 424
Target Start/End: Original strand, 35914347 - 35914421
Alignment:
| Q |
351 |
ttgacagttcatatttatgataaagctttgttaggttgctctagcagaaatttgaattatg-attctcttgtttg |
424 |
Q |
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||||||||| | |||| | ||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||| |
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| T |
35914347 |
ttgacagttaacatttcttataaagctttgttaggttgctctagcagatatttgaattatgaattctctcgtttg |
35914421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 35914143 - 35914211
Alignment:
| Q |
101 |
gacctgcttgaatccacacttacctatcagcacaagacatatgctgaagctgtcaaaaaagtcattgca |
169 |
Q |
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||||||||||||||||||||||||||| ||||| |||| |||||| ||||| | ||| ||||||||||| |
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| T |
35914143 |
gacctgcttgaatccacacttacctataagcacgagacttatgcttaagctattaaagaagtcattgca |
35914211 |
T |
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