View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13436_low_7 (Length: 447)
Name: NF13436_low_7
Description: NF13436
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13436_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 225381 - 225819
Alignment:
| Q |
1 |
gccataccaatcatggttccgtgacgtatgccaccatgaggaggcataatcgaaagttgaagctgctctttcaaaaacagataactgtgcccaacaatct |
100 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
225381 |
gccataccaatcatggttccgtgaagtattccaccatgaggaggcataatcgaaagttgaagctgctctttcaaaaacagataactgtgcccaacaattt |
225480 |
T |
|
| Q |
101 |
catccacttgtatatcaggatcagaagcaaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225481 |
catccacttgtatatcaggatcagaagcaaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaa |
225580 |
T |
|
| Q |
201 |
cattaatataattataaactataaactacatacaatccgaaccagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctg |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
225581 |
cattaatataattataaactataaactatatacaatccgaactagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctg |
225680 |
T |
|
| Q |
301 |
gaggaataggtccaggccaagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgccca |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
225681 |
gaggaataggtccaggccaagtttgagaaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcggaaaagagatgccca |
225780 |
T |
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| Q |
401 |
ctgcttcttcacacatgatatttgtgtccaatcactcac |
439 |
Q |
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| T |
225781 |
ctgcttcttcacacatgatatttgtgtccaatcactcac |
225819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 128 - 439
Target Start/End: Original strand, 233108 - 233410
Alignment:
| Q |
128 |
caaatatttgttgacttatatgtaaggccatgaatctcctgaaatcattagcatacaacatcaatttgtgaaacattaatataattataaactataaact |
227 |
Q |
| |
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|||||| ||||||| ||||||||| || ||||||| ||||||||| |||| ||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
233108 |
caaataattgttgatttatatgtatggtcatgaatatcctgaaattattaacatacaatatcaatttgtgaaacactaatata--------ctataaact |
233199 |
T |
|
| Q |
228 |
acatacaatccgaaccagaatcctgattgtaacaatctttgatcaagttttacttaccttctggctaaacctggaggaataggtccaggccaagtttgag |
327 |
Q |
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||||| |||| |||| ||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||| |
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| T |
233200 |
acatagaatcagaactcaaatcctgatagtaacaatctta-atcaagttttacttactttctgactaaacctggaggaataggtctaggccaagtttgag |
233298 |
T |
|
| Q |
328 |
aaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcacacatgatatttgtgt |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
233299 |
aaggattggtgaatggatagatgtgagaaagagcagcttgccaaaaacattcagttcgaaaaagagatgcccactgcttcttcacacatgatatttgtgt |
233398 |
T |
|
| Q |
428 |
ccaatcactcac |
439 |
Q |
| |
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|||||||||||| |
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|
| T |
233399 |
ccaatcactcac |
233410 |
T |
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