View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13437_high_1 (Length: 475)
Name: NF13437_high_1
Description: NF13437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13437_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 33340248 - 33340704
Alignment:
| Q |
1 |
aatgtttcttgttatcaggtttcaacagtttccttggaactaaaggagtcttcaactgcaaggcacaaacagtcaaaacaaaagtttcgaaactgactct |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340248 |
aatgtttcttgttatcaggtttcaacggtttccttggaactaaaggagtcttcaactgcaaggcacaaacagtcaaaacaaaagtttcgaaactgactct |
33340347 |
T |
|
| Q |
101 |
gagtacataataataaattaaccataaacaattcagcaatagattagacaatgaagaaggaagcaaattcaaaatcgacatatacctgattctgtttaag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340348 |
gagtacataataataaattaaccataaacaattcagcaatagattagacaatgaagagggaagcaaattcaaaatcgacatatacctgattctgtttaag |
33340447 |
T |
|
| Q |
201 |
cgtattggaagacagaacattctttttatttacagattttcttccgttaccgcccttgttatcttcttcaaaagtaggacgggttagaattgtagcacgc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33340448 |
cgtattggaagacagaacattctttttatttacagattttcttccgtgaccgcccttgttatcttcttcaaaagtaggacgagttagaattgtagcacgc |
33340547 |
T |
|
| Q |
301 |
ctttcagttgctagggaaaatggttgcggaactgtaggcttcacagtatctcgtggcttgtgattaccccttgttttgtgcggtttcgaacttttcgcat |
400 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33340548 |
ctttcagttgctagggaaaatggtcgcggaactgtaggcttcacagtatctcgtggcttgtgattaccccttgttttgtgcggtttcgaacttttcgcat |
33340647 |
T |
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| Q |
401 |
tgagaacaccctcaaaatctggtgttaacttctcctcactttttctgatgttagata |
457 |
Q |
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| T |
33340648 |
tgagaacaccctcaaaatctggtgttaacttctcctcactttttctgatgttagata |
33340704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 13211712 - 13211631
Alignment:
| Q |
20 |
tttcaacagtttccttggaactaaaggagtcttcaactgcaaggcacaaacagtcaaaacaaaagtttcgaaactgactctg |
101 |
Q |
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|||||||| ||| ||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||| | ||| |||||| |
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| T |
13211712 |
tttcaacaattttcttgggactaaaggaagcttcaactgcaaggtacaaacagtcaaagcaaaagtttcaagactaactctg |
13211631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 12844204 - 12844273
Alignment:
| Q |
18 |
ggtttcaacagtttccttggaactaaaggagtcttcaactgcaaggcacaaacagtcaaaacaaaagtttc |
88 |
Q |
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||||||||||| || ||||| ||||||| | ||| ||||||| ||| | |||||||||||||||||||||| |
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| T |
12844204 |
ggtttcaacagatttcttgggactaaagaaatct-caactgcgaggtagaaacagtcaaaacaaaagtttc |
12844273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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