View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13437_high_2 (Length: 397)
Name: NF13437_high_2
Description: NF13437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13437_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Original strand, 37295960 - 37296352
Alignment:
| Q |
6 |
aatcccaattgtcgattacatacaattctcgtttctcttcctagtagcaacaacaaaaacacataaa-----------------attaataatcatacgc |
88 |
Q |
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| T |
37295960 |
aatcccaattgccgattacatacaattctcgtttctcttcctagtagcaacaacaaaaacacataaaataaccttaaaattaaaattaataatcatacgc |
37296059 |
T |
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| Q |
89 |
tgaaaagtgaaaacagctttcaatcaaaatcggggacctaagtaacaattttatgacgtgatgattcaatttaaaaataatttttggtatatagatgaaa |
188 |
Q |
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| T |
37296060 |
tgaaaagtgaaaacagctttcaatcaaaatcggggacctaagtaacaattttatgacgtgatgattcaatttaaaaataatttttggtatatagatgaaa |
37296159 |
T |
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| Q |
189 |
tcaaaacatttacaatcgaaaattagcctaactgagctagtatgtatatgtaaaggtcaaattttatgaaaattgaattgaggtagagagaaagaaattg |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37296160 |
tcaaaacatttacaatcgaaaattagcctaactgagctagtatgtatatgtaaaggtaaaattttatgaaaattgaattgaggtagagagaaagaaattg |
37296259 |
T |
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| Q |
289 |
ggggaaaggggtttcgagaagaagaaggaacctgatcgggattgaagagcggcttgataacgtctggaagcggaagagagacgagaagaccaa |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37296260 |
ggggaaaggggtttcgagaagaagaaggaacctgatcgggattgaagagcggcttgataacgtctggaagcggaagagagacgagaagaccaa |
37296352 |
T |
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