View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13437_high_3 (Length: 385)
Name: NF13437_high_3
Description: NF13437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13437_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 5 - 368
Target Start/End: Complemental strand, 42624958 - 42624595
Alignment:
| Q |
5 |
atgaacacgattatctgagtgaatcgacatactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttgattcagt |
104 |
Q |
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| T |
42624958 |
atgaacacgattatctgaatggatcgacatactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttgattcagt |
42624859 |
T |
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| Q |
105 |
tgattcatgaacattttttgttaaacagatttatttatagacaaaacagaaacttcagagtcagaggccatttatttggcttaaattttgtaggctaaaa |
204 |
Q |
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| T |
42624858 |
tgattcatgaacattttttgttaaacagatttatttatagacaaaacagaaacttcagagtcagaggccatttatttggcttaaattttgcaggctaaaa |
42624759 |
T |
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| Q |
205 |
tcaaagactttatgtttgggcctaccccgaatctagcacgccagaaaaaatctcactaggaattgtaaatggtctagaattctatctaatactggtatgt |
304 |
Q |
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| T |
42624758 |
tcaaagactttatgtttgggcctaccccgaatctagcacgccagaaaaaatctcactaggaattgtaaatggtctagaattctatctaatactggtatgt |
42624659 |
T |
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| Q |
305 |
agatatgcaggtatcagtaataaataacaaagtatcttcaatgaaggctttggtattttcatat |
368 |
Q |
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| T |
42624658 |
agatatgcaggtatcagtaataaataacaaagtatcttcaatgaaggctttggtattttcatat |
42624595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 97
Target Start/End: Original strand, 35433101 - 35433166
Alignment:
| Q |
32 |
catactacaatactctacactgtctacccttcttgtatcgcattggttgagacgattattaatttg |
97 |
Q |
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| T |
35433101 |
catacgacaatactccacactgtccacccttcttgcatctccgtggttgagacgatcattaatttg |
35433166 |
T |
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