View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13437_high_4 (Length: 357)

Name: NF13437_high_4
Description: NF13437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13437_high_4
NF13437_high_4
[»] chr3 (3 HSPs)
chr3 (12-333)||(12220721-12221042)
chr3 (21-337)||(7424640-7424953)
chr3 (80-154)||(24991744-24991818)
[»] chr4 (3 HSPs)
chr4 (12-274)||(26474952-26475214)
chr4 (12-115)||(32057400-32057504)
chr4 (194-242)||(32057259-32057310)
[»] scaffold0036 (2 HSPs)
scaffold0036 (19-262)||(63999-64234)
scaffold0036 (19-262)||(69141-69376)
[»] chr8 (1 HSPs)
chr8 (83-149)||(15075074-15075140)
[»] scaffold0171 (1 HSPs)
scaffold0171 (12-66)||(29186-29240)
[»] chr7 (1 HSPs)
chr7 (87-154)||(28006828-28006895)
[»] chr2 (1 HSPs)
chr2 (80-122)||(8520631-8520673)
[»] chr6 (1 HSPs)
chr6 (80-124)||(14284833-14284877)
[»] chr1 (1 HSPs)
chr1 (74-154)||(2660603-2660683)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 12221042 - 12220721
Alignment:
Q  12 atcatcaccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgaatcaagctcacaatccatcgtgaatgaccacaaaaacaaaatcca 111  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  12221042 atcaacaccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaagctcacaatccatcttgaatgaccacaaaaacaaaatcca 12220943  T
Q  112 aacacatatcgtctgctactcacatcaaagccactccagaaaagaaacacatctattgaaaaaccctaacaacaactccccgccttctcatcaccacaaa 211  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  12220942 aacacatatcgtctgctactcaaatcaaagccactccagaaaagaaacacatctactgaaaaaccctaacaacagctccccgccttctcatcaccacaaa 12220843  T
Q  212 caacacctcacctcatcaccacaacttagccgaaattccgaaccaattcagctttccaccaccacaacttatgctcgtctttatggctaagtcaagtaca 311  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  12220842 caacacctcacctcatcaccacaacttagccgaaactccgaaccaattcagctttccagcaccacaacttatgctcgtctttatggctaagtcaattaca 12220743  T
Q  312 tgattaatgtcagctgaatgca 333  Q
    ||||||||||| ||| ||||||    
T  12220742 tgattaatgtcggctcaatgca 12220721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 21 - 337
Target Start/End: Original strand, 7424640 - 7424953
Alignment:
Q  21 aaaaccaagctaaacccctacaaactaaacataaaccaaaagttgaatcaagctcacaatccatcgtgaatgaccacaaaaacaaaatccaaacacatat 120  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||    
T  7424640 aaaaccaagctaaaccc-tacaaactaatcataaaccaaaagttgagtcaagctcacactccatagtgaatgaccacaaaaacaaa-tccaaacacctat 7424737  T
Q  121 cgtctgctactcacatcaaagccactccagaaaagaaacacatctattgaaaaaccctaacaacaactccccgccttctcatcaccacaaacaacacctc 220  Q
    ||||||||||||||| |||||||| | || ||||| |||||||    |||||||||| ||||||    || |||||||||||||||||||||||||||||    
T  7424738 cgtctgctactcacaccaaagccaattcaaaaaagcaacacattcgctgaaaaacccaaacaacgtaacctcgccttctcatcaccacaaacaacacctc 7424837  T
Q  221 acctcatcaccacaacttagccgaaattccgaaccaattcagctttccaccaccacaacttatgctcgtctttatggctaagtcaagtacatgattaatg 320  Q
    || |||||||||||||||||||||||||||||||||| ||||| |||| |||  ||||||| ||||| |||||||||||||| ||  ||||||||||||     
T  7424838 acatcatcaccacaacttagccgaaattccgaaccaaatcagc-ttcccccataacaacttttgctcatctttatggctaagacagttacatgattaata 7424936  T
Q  321 tcagctgaatgcaagtt 337  Q
    ||  || ||||||||||    
T  7424937 tcgtctcaatgcaagtt 7424953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 24991744 - 24991818
Alignment:
Q  80 tccatcgtgaatgaccacaaaaacaaaatccaaacacatatcgtctgctactcacatcaaagccactccagaaaa 154  Q
    |||| ||||||||  ||||||||||||||||||| || ||||||| ||| |||||| |||| || ||||| ||||    
T  24991744 tccaacgtgaatgggcacaaaaacaaaatccaaatacctatcgtccgcttctcacaccaaatccgctccaaaaaa 24991818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 12 - 274
Target Start/End: Complemental strand, 26475214 - 26474952
Alignment:
Q  12 atcatcaccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgaatcaagctcacaatccatcgtgaatgaccacaaaaacaaaatcca 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||| ||| | || |||||||||    
T  26475214 atcatcacgaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgagtcaaactcacactccatcgtgaatggccatagaatcaaaatcca 26475115  T
Q  112 aacacatatcgtctgctactcacatcaaagccactc-cagaaaagaaacacatctattgaaaaaccctaacaacaactccccgccttctcatcaccacaa 210  Q
    ||||| ||||| ||| || |||||||||||||||||  | ||||  |||||| | | | |||||||| ||||||||| || || ||||||||||||||||    
T  26475114 aacacctatcgcctgatattcacatcaaagccactctaaaaaaaccaacacacccactaaaaaacccaaacaacaacacctcgtcttctcatcaccacaa 26475015  T
Q  211 acaacacctcacctcatcaccacaacttagccgaaattccgaaccaattcagctttccaccacc 274  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||    
T  26475014 acaacacctcacctcatcaccccaacttagccgaaattctgaaccaattcaac-ttccaccacc 26474952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 32057504 - 32057400
Alignment:
Q  12 atcatcaccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgaatcaag--ctcacaatccatcgtgaatgaccacaaaaacaaaatc 109  Q
    |||| ||||||||| ||| |||||||| |||||| ||||||||||||||||||||  |||   |||||| ||||||||||||||| || |||| |||||     
T  32057504 atcaacaccaaaactaagttaaaccccaacaaac-aaacataaaccaaaagttgaggcaaaacctcacactccatcgtgaatgacaacgaaaataaaatt 32057406  T
Q  110 caaaca 115  Q
    ||||||    
T  32057405 caaaca 32057400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 32057310 - 32057259
Alignment:
Q  194 ccttctcatcaccacaaacaacacctcacc---tcatcaccacaacttagcc 242  Q
    ||||||||| ||||||||||||||||||||   |||||||||||| ||||||    
T  32057310 ccttctcattaccacaaacaacacctcaccttatcatcaccacaatttagcc 32057259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 63999 - 64234
Alignment:
Q  19 ccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgaatcaagctcacaatccatcgtgaatgaccacaaaaacaaaatccaaacacat 118  Q
    ||||||||||||||||||| || |||| || ||||||||||||||||| |||||| |||| ||||||| ||||||||||| ||||||||||||||| | |    
T  63999 ccaaaaccaagctaaaccc-tataaaccaa-cataaaccaaaagttgagtcaagcacacactccatcgcgaatgaccacagaaacaaaatccaaacgcct 64096  T
Q  119 atcg-tctgctactcacatcaaagccactccagaaaagaaacacatctattgaaaaaccctaacaacaactccccgccttctcatcaccacaaaca-aca 216  Q
    ||||  | |||||||||||||||||||||||| |||        ||| | |||||| ||| ||||||||| || | |||||||||||||||||||| |||    
T  64097 atcgcgcggctactcacatcaaagccactccaaaaa--------atcaactgaaaatcccaaacaacaacacctccccttctcatcaccacaaacagaca 64188  T
Q  217 cctcacctcatcaccacaacttagccgaaattccgaaccaattcag 262  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||    
T  64189 cctcacctcatcaccacaacatagccgaatttccgaactaattcag 64234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 262
Target Start/End: Original strand, 69141 - 69376
Alignment:
Q  19 ccaaaaccaagctaaacccctacaaactaaacataaaccaaaagttgaatcaagctcacaatccatcgtgaatgaccacaaaaacaaaatccaaacacat 118  Q
    ||||||||||||||||||| || |||| || ||||||||||||||||| |||||| |||| ||||||| ||||||||||| ||||||||||||||| | |    
T  69141 ccaaaaccaagctaaaccc-tataaaccaa-cataaaccaaaagttgagtcaagcacacactccatcgcgaatgaccacagaaacaaaatccaaacgcct 69238  T
Q  119 atcg-tctgctactcacatcaaagccactccagaaaagaaacacatctattgaaaaaccctaacaacaactccccgccttctcatcaccacaaaca-aca 216  Q
    ||||  | |||||||||||||||||||||||| |||        ||| | |||||| ||| ||||||||| || | |||||||||||||||||||| |||    
T  69239 atcgcgcggctactcacatcaaagccactccaaaaa--------atcaactgaaaatcccaaacaacaacacctccccttctcatcaccacaaacagaca 69330  T
Q  217 cctcacctcatcaccacaacttagccgaaattccgaaccaattcag 262  Q
    |||||||||||||||||||| |||||||| |||||||| |||||||    
T  69331 cctcacctcatcaccacaacatagccgaatttccgaactaattcag 69376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 15075074 - 15075140
Alignment:
Q  83 atcgtgaatgaccacaaaaacaaaatccaaacacatatcgtctgctactcacatcaaagccactcca 149  Q
    ||||| ||| |||||| ||||||||| ||||||  ||||||| |||||||||| |||||||||||||    
T  15075074 atcgtaaataaccacataaacaaaattcaaacagctatcgtccgctactcacaccaaagccactcca 15075140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 66
Target Start/End: Complemental strand, 29240 - 29186
Alignment:
Q  12 atcatcaccaaaaccaagctaaa-cccctacaaactaaacataaaccaaaagttga 66  Q
    |||| |||||||||||||||||| |||| ||||||| |||||||||||||||||||    
T  29240 atcaacaccaaaaccaagctaaaccccccacaaact-aacataaaccaaaagttga 29186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 87 - 154
Target Start/End: Complemental strand, 28006895 - 28006828
Alignment:
Q  87 tgaatgaccacaaaaacaaaatccaaacacatatcgtctgctactcacatcaaagccactccagaaaa 154  Q
    |||||| ||||| ||||||||| ||||||| ||||  | |||||||||| ||||||||||| ||||||    
T  28006895 tgaatggccacataaacaaaattcaaacacctatcacccgctactcacaccaaagccactcaagaaaa 28006828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 122
Target Start/End: Complemental strand, 8520673 - 8520631
Alignment:
Q  80 tccatcgtgaatgaccacaaaaacaaaatccaaacacatatcg 122  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||    
T  8520673 tccatcgtgaatggccacataaacaaaatccaaacacctatcg 8520631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 14284833 - 14284877
Alignment:
Q  80 tccatcgtgaatgaccacaaaaacaaaatccaaacacatatcgtc 124  Q
    |||||| ||||||||||||||| |||| ||||||||| |||||||    
T  14284833 tccatcatgaatgaccacaaaatcaaattccaaacacctatcgtc 14284877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 2660603 - 2660683
Alignment:
Q  74 tcacaatccatcgtgaatgaccacaaaaacaaaatccaaacacatatcgtctgctactcacatcaaagccactccagaaaa 154  Q
    ||||| ||||| ||||| | ||||| |||||||||||||||||  |||  || ||||||||| |||||| |||||| ||||    
T  2660603 tcacactccattgtgaagggccacataaacaaaatccaaacactcatcacctactactcacaccaaagctactccaaaaaa 2660683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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