View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13437_high_7 (Length: 303)
Name: NF13437_high_7
Description: NF13437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13437_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 12328058 - 12327776
Alignment:
| Q |
1 |
agctatataatctatacatatatgcaggtatttggtagccagagttgggatgcagcatttgctatacaagcaatagttggttgtaacgtgagtgaggatt |
100 |
Q |
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| T |
12328058 |
agctatataatctatacatatatgcaggtatttggtagccagagttgggatgcagcatttgctatacaagcaatagttggttgtaacgtgagtgaggatt |
12327959 |
T |
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| Q |
101 |
atggtcctacacttaagaaagcacatcactttcttaagtcttcacaggtagttgaaaacccatcaggtgattttagggcaatgtacagacacattagcaa |
200 |
Q |
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| T |
12327958 |
atggtcctacacttaagaaagcacatcactttcttaagtcttcacaggtagttgaaaacccatcaggtgattttagggcaatgtacagacacattagcaa |
12327859 |
T |
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| Q |
201 |
aggagcatggacattctcaatacaagatgaaggttggcaagtttccgactgcactgcagaagcactcaaggtacaaattagtg |
283 |
Q |
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| T |
12327858 |
aggagcatggacattctcaatacaagatgaaggttggcaagtttccgactgcactgcagaagcactcaaggtacaaattagtg |
12327776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 20 - 274
Target Start/End: Complemental strand, 12294802 - 12294548
Alignment:
| Q |
20 |
atatgcaggtatttggtagccagagttgggatgcagcatttgctatacaagcaatagttggttgtaacgtgagtgaggattatggtcctacacttaagaa |
119 |
Q |
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| T |
12294802 |
atatgcagggctttggttgtcagacatgggatgcagcattttctatacaagcaatagttggttgtaacgtaagtgaggagtatggtcgcacacttcgaaa |
12294703 |
T |
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| Q |
120 |
agcacatcactttcttaagtcttcacaggtagttgaaaacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattctca |
219 |
Q |
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| T |
12294702 |
agcacatgaatttctgaaggcttcacaggtggttgataacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattttca |
12294603 |
T |
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| Q |
220 |
atacaagatgaaggttggcaagtttccgactgcactgcagaagcactcaaggtac |
274 |
Q |
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| T |
12294602 |
atacaagatgaaggttggcaagcctctgactgcactgcagtaggactcaaggtac |
12294548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 46 - 272
Target Start/End: Complemental strand, 35182956 - 35182730
Alignment:
| Q |
46 |
tgggatgcagcatttgctatacaagcaatagttggttgtaacgtgagtgaggattatggtcctacacttaagaaagcacatcactttcttaagtcttcac |
145 |
Q |
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| T |
35182956 |
tgggatgcagcatttgctatacaagcaatacttgcttgtaacgtgagtgaagagtatggtcctacactttggaaagcacatgacttcctgaaggcctcac |
35182857 |
T |
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| Q |
146 |
aggtagttgaaaacccatcaggtgattttagggcaatgtacagacacattagcaaaggagcatggacattctcaatacaagatgaaggttggcaagtttc |
245 |
Q |
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| T |
35182856 |
aggtagttgaaaatccatccggtgagttcaaagcaatgtacagacacatatgcaaaggatcgtggacattctcaatgcatgaccaaggttggcaagtctc |
35182757 |
T |
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| Q |
246 |
cgactgcactgcagaagcactcaaggt |
272 |
Q |
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|||||||| ||||||| ||||||||| |
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| T |
35182756 |
tgactgcaccgcagaaggactcaaggt |
35182730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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