View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13437_low_5 (Length: 328)
Name: NF13437_low_5
Description: NF13437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13437_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 15579817 - 15580115
Alignment:
| Q |
18 |
ttaaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaatatctgtaacatcaggtccagagagtatttcagagggaagaaaatgg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15579817 |
ttaaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaatatctgtaacatcaggtccagagagtatttcagagggaagaaaatgg |
15579916 |
T |
|
| Q |
118 |
aatctaaaggtatatttataagtagccacattgaaatttcaagnnnnnnnttcaatgacactttaggcataattttatgtaccagattctgtgaggctgg |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15579917 |
aatctaaaggtaaatttataagtagccacattgaaatttcaagaaaaaaattcaatgacactttaggcataattttatgtaccagattctgtgaggctgg |
15580016 |
T |
|
| Q |
218 |
tcagagtctgtctagcagcttcactatccatatccatgtgaactcctctgtaaatttcttcaagttcattctgtcttttaaacactaattccttcatct |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15580017 |
tcagagtctgtctagcagcttcactatccatatccatgtgaactcctctgtatatttcttcaagttcattctgtcttttaaacactaattccttcatct |
15580115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 12050507 - 12050212
Alignment:
| Q |
20 |
aaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaatatctgtaacatcaggtccagagagtatttcagagggaagaaaatggaa |
119 |
Q |
| |
|
|||| |||||||||| |||||||||||||||| |||||||| |||||||||| | ||||||||||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
12050507 |
aaattgcaaaatcgtcggttttcacgattctggtaaggattctaacaacaatatatataacatcaggtccagagggtatttaagagggaataaaatggaa |
12050408 |
T |
|
| Q |
120 |
tctaaaggtatatttataagtagccacattgaaatttcaagnnnnnnn-ttcaatgacactttaggcataattttatgtaccagattctgtgaggctggt |
218 |
Q |
| |
|
|||| || || ||||||||||||||| ||||||| ||||| |||||| |||| |||||||| |||| |||||||||||||| |||| || | |
|
|
| T |
12050407 |
tctacagatacatttataagtagccatgttgaaatatcaagaaaaaaaattcaataacaccttaggcattattt-atgtaccagattctatgagattgat |
12050309 |
T |
|
| Q |
219 |
cagagtctgtctagcagcttcactatccatatccatgtgaactcctctgtaaatttcttcaagttcattctgtcttttaaacactaattccttcatct |
316 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
12050308 |
cagaatctgtcta-cagcttcactatccatatccatgtgatctcctttgtaaatttgttcaagttcattgtgtcttttaaacactaattccttcatct |
12050212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 312
Target Start/End: Complemental strand, 8334939 - 8334654
Alignment:
| Q |
20 |
aaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaatatctgtaacatcaggtccagagagtatttcagagggaagaaaatggaa |
119 |
Q |
| |
|
|||||||||||| || ||||||||||||||||| |||||||||||||||||| ||||| |||||||||| |||| |||||| ||||||||||||| |||| |
|
|
| T |
8334939 |
aaatcgcaaaattgtgggttttcacgattctgattaggattctgacaacaatgtctgt-acatcaggtcgagagtgtatttaagagggaagaaaacggaa |
8334841 |
T |
|
| Q |
120 |
tctaaaggtatatttataagtagccacattgaaatttcaag-nnnnnnnttcaatgacactttaggcataattttatgtaccagattctgtgaggctggt |
218 |
Q |
| |
|
|||| |||| |||| || |||||||| || |||||||||| ||||| |||||| ||| || | ||||||||| || ||||| ||| |
|
|
| T |
8334840 |
gctaatggtacatttgtacgtagccacgtttaaatttcaagaaaaaaaattcaacaacacttcagggat-agtttatgtac------ctatgaggtcggt |
8334748 |
T |
|
| Q |
219 |
cagagtctgtctagcagcttcactatccatatccatgtgaactcctctgtaaatttcttcaagttcattctgtcttttaaacactaattccttc |
312 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
8334747 |
cagaatctgtctagcagctttagcatccatatccatgtgtgctcctctatgaatttcttcaagttcattctgtcttttaaacgctaattccttc |
8334654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 11908486 - 11908781
Alignment:
| Q |
20 |
aaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaatatctgtaacatcaggtccagagagtatttcagagggaagaaaatggaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| || |||||| |||||||| ||||||||| |
|
|
| T |
11908486 |
aaatcgcaaaatcgttggttttcacgattctggttaggattctgacaacaatatctgtaacatcagatccatagggtatttaagagggaataaaatggaa |
11908585 |
T |
|
| Q |
120 |
tctaaaggtatatttataagtagccacattgaaatttcaagnnnnnnnttcaatgacactttaggcataattttatgtaccagattctgtgaggctggtc |
219 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |||| |||||| |||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
11908586 |
tctaaaggtacatttataagtagccacgttgaaatttcaagaaaaaaattcagcaacacttcaggcat-tgtttatgtaccagattctatgaggctggtc |
11908684 |
T |
|
| Q |
220 |
agagtctgtctagcagcttcactatccatatccatgtgaactcctctgtaaatttcttcaagttcattctgtcttttaaacactaattccttcatct |
316 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
11908685 |
agaatctgtctaacagcttcactatccatatccatatgaactcctctgtaaatttcttcaagtacattctatcttttaaacactaattccttcatct |
11908781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 15905308 - 15905359
Alignment:
| Q |
20 |
aaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaat |
71 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
15905308 |
aaatcgcaaaatcgtgggttttcacgattctgatcaggtttctgacaacaat |
15905359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 41022191 - 41022242
Alignment:
| Q |
20 |
aaatcgcaaaatcgttggttttcacgattctgaataggattctgacaacaat |
71 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
41022191 |
aaatcgcaaaaacgtgggttttcacgattctgatcaggattctgacgacaat |
41022242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University