View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13437_low_6 (Length: 321)
Name: NF13437_low_6
Description: NF13437
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13437_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 99 - 302
Target Start/End: Original strand, 34851473 - 34851676
Alignment:
| Q |
99 |
tctcatcctttttcagccctcgtttaagtacctgagaaatttattatatccttcctagaaaaatattcaaatatcttgtaaatgatgagatctaatgaaa |
198 |
Q |
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| T |
34851473 |
tctcatcctttttaagccctcgtttaattacctgaggaatttattatatccttcctagaaaaatattcaaatatcttgtaaatgatgagatctaatgaaa |
34851572 |
T |
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| Q |
199 |
tgtttgaaacttacttaataactaaattaaattctaagaatattatgtcacgagttgactttataatttttattaagaatatgattcaaaatagccacta |
298 |
Q |
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| T |
34851573 |
tgtttgaaacttacttaataactaaattaaattctaagaatattatgtcacgagttgactttataatttttattaagaatatgattcaaaatagccacta |
34851672 |
T |
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| Q |
299 |
gaaa |
302 |
Q |
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|||| |
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| T |
34851673 |
gaaa |
34851676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 34851411 - 34851485
Alignment:
| Q |
9 |
caagaaaattattccccaagaaaaaggaccactgaaccccaccatgttgtgagtgccatcattctcatccttttt |
83 |
Q |
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| T |
34851411 |
caagaaaattattccccaagaaacaggaccactgaaccccaccatgttgtgagtgccatcattctcatccttttt |
34851485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 204
Target Start/End: Original strand, 3511619 - 3511696
Alignment:
| Q |
128 |
acctgagaaatttattatatccttcctagaaaa-atattcaaatatcttgtaaatgatgagatctaatgaaatgtttg |
204 |
Q |
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| T |
3511619 |
acctgaggaatttattatatccttcctagaaaacatatacaaacatcttataaatggtgagatctaattaaatgtttg |
3511696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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