View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13438_high_2 (Length: 555)

Name: NF13438_high_2
Description: NF13438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13438_high_2
NF13438_high_2
[»] chr3 (2 HSPs)
chr3 (23-547)||(25729904-25730441)
chr3 (19-63)||(22251478-22251522)
[»] chr8 (6 HSPs)
chr8 (271-545)||(1800300-1800574)
chr8 (345-547)||(1782594-1782796)
chr8 (349-538)||(1776172-1776361)
chr8 (164-249)||(1782438-1782524)
chr8 (382-487)||(1771591-1771696)
chr8 (172-249)||(1800228-1800299)
[»] chr1 (4 HSPs)
chr1 (349-455)||(19790008-19790113)
chr1 (165-235)||(19790211-19790279)
chr1 (397-439)||(41324592-41324634)
chr1 (397-439)||(47249688-47249730)
[»] chr5 (6 HSPs)
chr5 (349-455)||(1672778-1672884)
chr5 (349-440)||(4081431-4081520)
chr5 (380-453)||(21124749-21124822)
chr5 (165-235)||(4081646-4081714)
chr5 (174-211)||(38501746-38501783)
chr5 (174-212)||(22701378-22701416)
[»] chr2 (2 HSPs)
chr2 (376-439)||(4845155-4845218)
chr2 (165-235)||(32315466-32315534)
[»] chr7 (1 HSPs)
chr7 (174-210)||(2399467-2399503)
[»] chr4 (2 HSPs)
chr4 (20-64)||(2888872-2888916)
chr4 (20-64)||(45304008-45304052)


Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 23 - 547
Target Start/End: Complemental strand, 25730441 - 25729904
Alignment:
Q  23 atatattattcatttgtccataccaaccgaggtaagctcacacataaacgaattagtctaaacattggcatag---ggctcaatactcaatagtaagaat 119  Q
    ||||||||| |||||||| ||| |||||||| ||||||||||||| ||| ||||||||||||||||||||||    ||||||||||||||| ||||||||    
T  25730441 atatattatgcatttgtctatagcaaccgagttaagctcacacatgaacaaattagtctaaacattggcataaattggctcaatactcaatggtaagaat 25730342  T
Q  120 ttatctttataacttaaaaggatgaagttcaaatcccctcaactattttaattgaaatgatcattagtgtcaatttaattaataataatttcaccaat-- 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||      
T  25730341 ttatctttataacttaaaaggatgaagttcaaatcccctcaactattttaattgaaatgatcattagtgtcaatttaattaataataatttcactaatta 25730242  T
Q  218 -ctccatttattttaaaaacaatacacaacatccagtgaaaatcacaacat--------atgaataaaatcacatactaataacgatgaaaatcttaaag 308  Q
     | ||||||||||||||||||||||||||||||   ||  || || ||||         || |||||||||||| ||||| |||||||||||||||||||    
T  25730241 tcaccatttattttaaaaacaatacacaacatctt-tgctaaacaaaacaatacacaacatcaataaaatcacaaactaacaacgatgaaaatcttaaag 25730143  T
Q  309 cttttgattaaaaacactaatgaattgaaatccttgttagtatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgacc 408  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||    
T  25730142 cttttgattaaaaacactaatgaattgaaatccttgttagtatttgtgagcaatctttagaatgtgagaggtgagtttttttggtttggagaacatgacc 25730043  T
Q  409 atgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgc 508  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25730042 atatgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcacccacatttgataatcctctggaaacaaaatgtcttctttgc 25729943  T
Q  509 tgatgatgaagactttaggtacccttccatgcctatgct 547  Q
    |||||||| |||||||||| |||||||||| ||||||||    
T  25729942 tgatgatgtagactttaggcacccttccatacctatgct 25729904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 22251478 - 22251522
Alignment:
Q  19 gtgcatatattattcatttgtccataccaaccgaggtaagctcac 63  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||    
T  22251478 gtgcatatattatgcatttgtccataccaactgagttaagctcac 22251522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 271 - 545
Target Start/End: Original strand, 1800300 - 1800574
Alignment:
Q  271 aataaaatcacatactaataacgatgaaaatcttaaagcttttgattaaaaacactaatgaattgaaa-tccttgttagtatttgtgagcaatatttaga 369  Q
    |||||||||||| |||||||| |||| |||||||||| || |||||||||||||| |||||||||||| ||||||| |||||||| ||||||  ||||||    
T  1800300 aataaaatcacaaactaataaagatggaaatcttaaa-ctgttgattaaaaacaccaatgaattgaaaatccttgtcagtatttgcgagcaacttttaga 1800398  T
Q  370 atgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcatcc 469  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||    
T  1800399 atgtgagaggtgagcttttctggtttagaaaacatgaccatgtgatctgaatcctttatcactttcacctcaacatatggacgagtattctcaatcatcc 1800498  T
Q  470 acatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctatg 545  Q
    | |||||| |||||||||  |||||| | ||||||||||||||||||||| ||||||| |||||||||| ||||||    
T  1800499 atatttgaaaatcctctgtcaacaaattatcttctttgctgatgatgaaggctttaggcacccttccattcctatg 1800574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 345 - 547
Target Start/End: Original strand, 1782594 - 1782796
Alignment:
Q  345 ttagtatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaaca 444  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| | |||||||||||||| ||||||    
T  1782594 ttagtatttgtgagcaatctttagaatgtgagaggtgagttttttaggtttagagaacatgaccatgtgatctgaatcctttatcactttcacttcaaca 1782693  T
Q  445 tatggaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccatgcctat 544  Q
    |||||||||||  || |||| ||||| | |||   |||||||   |  | | ||||| |||||||||| ||||||||||| ||||||||||||| ||| |    
T  1782694 tatggaccagttctctcaattatccataattgcatatcctctttgatgatattgtctcctttgctgataatgaagacttttggtacccttccattcctct 1782793  T
Q  545 gct 547  Q
    |||    
T  1782794 gct 1782796  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 349 - 538
Target Start/End: Original strand, 1776172 - 1776361
Alignment:
Q  349 tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatg 448  Q
    |||||||||||| |  ||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||| | |||||||||||||| ||||||||||    
T  1776172 tatttgtgagcactccttagaatatgagaggtgagctttttaggtttggagaacataaccatgtgatctgaatcctttatcactttcacttcaacatatg 1776271  T
Q  449 gaccagtattcccaatcatccacatttgataatcctctggaaacaaaatgtcttctttgctgatgatgaagactttaggtacccttccat 538  Q
    |||||||  || |||| ||||| | |||   |||||||  ||  ||||||||| ||||   ||| ||||||||||| |||||||||||||    
T  1776272 gaccagttctctcaattatccataattgcagatcctctctaatgaaaatgtctcctttagagataatgaagacttttggtacccttccat 1776361  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 164 - 249
Target Start/End: Original strand, 1782438 - 1782524
Alignment:
Q  164 attttaattgaaatgatcattagtgtcaatttaattaataataatttcaccaatctcc-atttattttaaaaacaatacacaacatc 249  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||||| |||| |||||  |||||| ||||||||||||||||||||    
T  1782438 attttaattaaaatgatcactagtatcaatttaattaataataatttaaccattctcctttttattataaaaacaatacacaacatc 1782524  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 487
Target Start/End: Original strand, 1771591 - 1771696
Alignment:
Q  382 agcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggaccagtattcccaatcatccacatttgataat 481  Q
    ||||| ||||||||||| ||||||||||||||||| ||| | | |||||||| |||||   || |||||||| |  ||  |||||||||||||||| |||    
T  1771591 agcttctttggtttagacaacatgaccatgtgatcagaatcctctatcacttccaccttctcaaatggaccacttctcttaatcatccacatttgaaaat 1771690  T
Q  482 cctctg 487  Q
    ||||||    
T  1771691 cctctg 1771696  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 1800228 - 1800299
Alignment:
Q  172 tgaaatgatcattagtgtcaatttaattaataataatttcaccaatctccatttattttaaaaacaatacacaacatc 249  Q
    |||||||||||||||||||||||      |||||||||||||||  ||||| |||||||||||| |||||| ||||||    
T  1800228 tgaaatgatcattagtgtcaatt------ataataatttcaccatactccaattattttaaaaataatacagaacatc 1800299  T

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Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 349 - 455
Target Start/End: Complemental strand, 19790113 - 19790008
Alignment:
Q  349 tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatg 448  Q
    |||||||||| ||| ||||| ||||||||| | || ||||||||||| |||||||||||||| ||||||||| | |||||||| ||||||||||||||||    
T  19790113 tatttgtgagaaatctttagtatgtgagagttaag-ttttttggtttggagaacatgaccatttgatctgaatcctttatcacattcacctcaacatatg 19790015  T
Q  449 gaccagt 455  Q
    |||||||    
T  19790014 gaccagt 19790008  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 19790279 - 19790211
Alignment:
Q  165 ttttaattgaaatgatcattagtgtcaatttaattaataataatttcaccaatctccatttattttaaaaa 235  Q
    |||| ||| |||||||||  ||| ||||||| ||||| ||||| ||||||| |||||||||||||||||||    
T  19790279 tttttattaaaatgatca--agtatcaatttcattaaaaataaattcaccattctccatttattttaaaaa 19790211  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 41324592 - 41324634
Alignment:
Q  397 gagaacatgaccatgtgatctgaaccatttatcactttcacct 439  Q
    |||||||||||||||||||||||| | |||||||| |||||||    
T  41324592 gagaacatgaccatgtgatctgaatcctttatcacattcacct 41324634  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 397 - 439
Target Start/End: Complemental strand, 47249730 - 47249688
Alignment:
Q  397 gagaacatgaccatgtgatctgaaccatttatcactttcacct 439  Q
    |||||||||||||||||||||||| | |||||||| |||||||    
T  47249730 gagaacatgaccatgtgatctgaatcctttatcacattcacct 47249688  T

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Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 349 - 455
Target Start/End: Original strand, 1672778 - 1672884
Alignment:
Q  349 tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatg 448  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||| ||| |  ||||||| |||| ||||| | |||    
T  1672778 tatttgtgagcaatctttagtatgtgagaggtgagcttttttggtttggagaacatgaccatttgatccgaatccattatcacattcagctcaatacatg 1672877  T
Q  449 gaccagt 455  Q
    || ||||    
T  1672878 gatcagt 1672884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 440
Target Start/End: Complemental strand, 4081520 - 4081431
Alignment:
Q  349 tatttgtgagcaatatttagaatgtgagaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctc 440  Q
    ||||||||| |||| ||||| |||||||  |||||||||||| |||||||||||||| |||||||||||||| |  ||||||| ||||||||    
T  4081520 tatttgtgaccaatctttagtatgtgag--gtgagcttttttagtttagagaacatggccatgtgatctgaatccattatcacattcacctc 4081431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 380 - 453
Target Start/End: Complemental strand, 21124822 - 21124749
Alignment:
Q  380 tgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacctcaacatatggacca 453  Q
    |||||||||||||||| |||||||||||||| | ||||||| | |||||||| |||||||||| | ||||||||    
T  21124822 tgagcttttttggtttggagaacatgaccattttatctgaatcctttatcacattcacctcaatacatggacca 21124749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 4081714 - 4081646
Alignment:
Q  165 ttttaattgaaatgatcattagtgtcaatttaattaataataatttcaccaatctccatttattttaaaaa 235  Q
    |||| ||| |||||||||  |||||||||||  |||| ||||||||||||| |||||||||||||||||||    
T  4081714 tttttattaaaatgatca--agtgtcaatttcgttaaaaataatttcaccattctccatttattttaaaaa 4081646  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 38501746 - 38501783
Alignment:
Q  174 aaatgatcattagtgtcaatttaattaataataatttc 211  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  38501746 aaatgatcattagtgtcaatttaatcaataataatttc 38501783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 212
Target Start/End: Original strand, 22701378 - 22701416
Alignment:
Q  174 aaatgatcattagtgtcaatttaattaataataatttca 212  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  22701378 aaatgataattagtgtcactttaattaataataatttca 22701416  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 4845155 - 4845218
Alignment:
Q  376 gaggtgagcttttttggtttagagaacatgaccatgtgatctgaaccatttatcactttcacct 439  Q
    |||||||||||||||| ||||| ||||||||| |||||||||||| |  ||||||| |||||||    
T  4845155 gaggtgagcttttttgctttagtgaacatgactatgtgatctgaatccattatcacattcacct 4845218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 32315466 - 32315534
Alignment:
Q  165 ttttaattgaaatgatcattagtgtcaatttaattaataataatttcaccaatctccatttattttaaaaa 235  Q
    |||| ||| |||||||||  ||||||||||| ||||  ||||||||||||| |||||||||||| ||||||    
T  32315466 tttttattaaaatgatca--agtgtcaatttcattacaaataatttcaccattctccatttattataaaaa 32315534  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 2399467 - 2399503
Alignment:
Q  174 aaatgatcattagtgtcaatttaattaataataattt 210  Q
    |||||||||||||||||| | ||||||||||||||||    
T  2399467 aaatgatcattagtgtcattataattaataataattt 2399503  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 2888916 - 2888872
Alignment:
Q  20 tgcatatattattcatttgtccataccaaccgaggtaagctcaca 64  Q
    |||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  2888916 tgcatatattatacatttgtccctaccaactgagctaagctcaca 2888872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 45304008 - 45304052
Alignment:
Q  20 tgcatatattattcatttgtccataccaaccgaggtaagctcaca 64  Q
    |||||||||||| |||||||||| |||||| ||| ||||||||||    
T  45304008 tgcatatattatgcatttgtccacaccaactgagttaagctcaca 45304052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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