View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13438_high_3 (Length: 515)
Name: NF13438_high_3
Description: NF13438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13438_high_3 |
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| [»] scaffold0649 (1 HSPs) |
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Alignment Details
Target: scaffold0649 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 5400 - 4906
Alignment:
| Q |
1 |
tgccaatacgcaaacaattggcataatcggtggtatttcagcaaaatctagaggtacgagcaactgtgtgcattcgtccgtccccaaatcaagcgagata |
100 |
Q |
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| T |
5400 |
tgccaatacgcaaacaattggcataataggtggtatttcatcaaaatctagaggtacgagcaactgtgtgcattcctccgtccccaaatcaagcgagata |
5301 |
T |
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| Q |
101 |
atgccaaattgttcaatcgtatcgttaagatctttccaatccgagtaaagataaacaatgttattgcaaagggtaaaccaattaagactgttgctaaaat |
200 |
Q |
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| T |
5300 |
atgccaaattgttcaatcgtatcgttaagatctttccaatccgagtaaagataaacaatgttattgcaaagggtaaaccaattaagactgttactaaaat |
5201 |
T |
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| Q |
201 |
agacaccaccattctgatccaaaccagtctgagcggaacgagtgcaacgaaaaggagtcgatgggaaactttcaatactcttccaaacatgatcacctaa |
300 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5200 |
agacaccaccattctgatccaaaccagtccgagcagaacgagtgcaacgaaaaggagtcgaagggaaactttcaatactcttccaaacatgatcacctaa |
5101 |
T |
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| Q |
301 |
actaaacacttttgcaataccgggactataagccaccaccttatattttccggttgtgttatcataaccaaacgaaaattttaaatagagatgtttaacc |
400 |
Q |
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| T |
5100 |
actaaacactttcgcaataccgggactataggccacaaccttatattttccggttgtgttatcataaccaaacgaaaattttaaatagagatgtctaacc |
5001 |
T |
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| Q |
401 |
ctaagctcaacgtaagaatagccgagtcttttcgatgctgacctcgtggccgggttccagaaacggaggcaagagctttgatacttaccatcgat |
495 |
Q |
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| T |
5000 |
ctaagctcaacgtaagaatagccgagtcttttcgatactgacctcgtggccgggttccagaaacggaggcaagagctttgatacttaccatcgat |
4906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 20967415 - 20967359
Alignment:
| Q |
332 |
gccaccaccttatattttccggttgtgttatcataaccaaacgaaaattttaaatag |
388 |
Q |
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| T |
20967415 |
gccaccaccttatattttccggttgtattatcgcaaccaaatgaaaatctgaaatag |
20967359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 332 - 388
Target Start/End: Complemental strand, 20980238 - 20980182
Alignment:
| Q |
332 |
gccaccaccttatattttccggttgtgttatcataaccaaacgaaaattttaaatag |
388 |
Q |
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| T |
20980238 |
gccaccaccttatattttccggttgtattatcgtagccaaatgaaaatctgaaatag |
20980182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 15572097 - 15572138
Alignment:
| Q |
80 |
gtccccaaatcaagcgagataatgccaaattgttcaatcgta |
121 |
Q |
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| T |
15572097 |
gtccccaaatcaagcgagattatcacaaattgttcaatcgta |
15572138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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