View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13438_high_7 (Length: 354)
Name: NF13438_high_7
Description: NF13438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13438_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 348
Target Start/End: Original strand, 35205300 - 35205630
Alignment:
| Q |
18 |
atctttgctgcataacagaagaacctaccattcccaaagtcctcttctcatcaaattcttgcaagacattaataagtttccgcgctttcttctccgcttg |
117 |
Q |
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| T |
35205300 |
atctttgctgcataacagaagaacctaccattcccaaagtcctcttctcatcaaattcttgcaagacattaataagtttccgcgctttcttctccgcttg |
35205399 |
T |
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| Q |
118 |
aggagtaccatcggtaagatttgcataaagcaaaggcataatccccgaagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagt |
217 |
Q |
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| T |
35205400 |
aggagtaccatcggtaagatttgcataaagcaaaggcataatccccgaagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagt |
35205499 |
T |
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| Q |
218 |
gaaaccaaaatggaaacacagtactccttctccgcactcgaatttgcagattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35205500 |
gaaaccaaaatggaaacacagtactccttctccgcacgcgaatttgcagattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcac |
35205599 |
T |
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| Q |
318 |
gagcaccatccacattctccgcctatgctac |
348 |
Q |
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||||||||||||||||||||||| ||||||| |
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| T |
35205600 |
gagcaccatccacattctccgccaatgctac |
35205630 |
T |
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