View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13438_low_1 (Length: 560)
Name: NF13438_low_1
Description: NF13438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13438_low_1 |
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| [»] scaffold0024 (5 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 250; Significance: 1e-138; HSPs: 5)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 60 - 531
Target Start/End: Complemental strand, 30878 - 30427
Alignment:
| Q |
60 |
ccgaaaatttcacagaatgaaaattgctactaatctataatatcaataattcaatatataaaggggatatcaagatttggtgtgacttttatttaagatt |
159 |
Q |
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| T |
30878 |
ccgaaaaattcacagaatgaaaactgctactaatctataatatcaata--------tataaagggaatatcaaattttggtg--acttttatttcagatt |
30789 |
T |
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| Q |
160 |
aaacaaaaccaataatgcaacagaatgaaaattgagatggtgagcaaactacttacagaaaatatgcgcccatctcgggataatgcaacagaatgagtac |
259 |
Q |
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| T |
30788 |
aaacaaaac-----atggcaaagaa----aattgagatggtgagcaaactacttacagaaaatatgcgcccatctcgggttaatgcaacagaatgagtac |
30698 |
T |
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| Q |
260 |
ctccacaggacacctgaccacaaaccaataaatagatatttcagcataaactagtcataactattattagtagaaaaacactaatgactattttacagcc |
359 |
Q |
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| T |
30697 |
ctccacaagacacctgaccacaaaccaataaatagatatttcagcat-aactagtcataactattattagtaaaaaaacactaatgactattttacaatc |
30599 |
T |
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| Q |
360 |
gaccctgagagaactttgtcgttaaactcttatcac--taagctaacacctttatggcgttatgtaattcaatggaagctaattagagatgataagataa |
457 |
Q |
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| T |
30598 |
gaccctgagagaactttatctcttga-ggttatgacgttaagctaacacc-ttatggcattatgtaattcaatggaagctaattagagatgataagataa |
30501 |
T |
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| Q |
458 |
gaaaaaattacataattagaaagcgctatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttc |
531 |
Q |
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| T |
30500 |
gaaaaaagtacataattagaaagcgctatttgtgaaggtgaaatcatttccactatgaaagtgactgttgtttc |
30427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 60 - 224
Target Start/End: Complemental strand, 65862 - 65702
Alignment:
| Q |
60 |
ccgaaaatttcacagaatgaaaattgctactaatctataatatcaataattcaatatataaaggggatatcaagatttggtgtgacttttatttaagatt |
159 |
Q |
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| T |
65862 |
ccgaaaatttcacagaatgaaaattgctactaatctataatatcaataattcaatatataaaggggatatcaagatttggtgtgacttttatttaagatt |
65763 |
T |
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| Q |
160 |
aaacaaaaccaataatgcaacagaatgaaaattgagatggtgagcaaactacttacagaaaatat |
224 |
Q |
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| T |
65762 |
aaacaaaaccaataatgcaacagaatgaaaattgagatggt----aaactacttacagaaaatat |
65702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 484 - 553
Target Start/End: Complemental strand, 65704 - 65635
Alignment:
| Q |
484 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctac |
553 |
Q |
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| T |
65704 |
tatttgtgaaggcgaaaccatttccactatcaaagtgactattgtttcataaccatgatacctatgctac |
65635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 31034 - 30991
Alignment:
| Q |
18 |
gtctacaggtacctccattggttgaccagtagtgactttcctcc |
61 |
Q |
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| T |
31034 |
gtctataggtacctccattggttgaccagtagtgactttcctcc |
30991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 66012 - 65975
Alignment:
| Q |
24 |
aggtacctccattggttgaccagtagtgactttcctcc |
61 |
Q |
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| T |
66012 |
aggtacctccattggttgaccagtagtgactttcctcc |
65975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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