View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13438_low_4 (Length: 463)
Name: NF13438_low_4
Description: NF13438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13438_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 29 - 444
Target Start/End: Complemental strand, 52711667 - 52711258
Alignment:
| Q |
29 |
gtatattaaaactatactatgtgtacataatacattgtgatgattctgtataatttaataatgtagtattttagttcatacttatgatgaagggagctgc |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52711667 |
gtatattaaaactatactatgtgtacataatacattgtgatgattctgtataatttaataatgtagtattt-agttcatacttatgatgaagggagctgc |
52711569 |
T |
|
| Q |
129 |
cttccatcctccggttgttcttttatcagcaatcctaccttgccgatccacacggccattgcttaccaagctactcgattccatttcctcctgttttata |
228 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52711568 |
cttccatcctccggttgttcttttattagcaatcctaccttgccgatccacacggccattgcttaccaagctactcgattccatttcctcctgttttata |
52711469 |
T |
|
| Q |
229 |
aaattcaaaacaatatgacataacatgaaaaatacgtaattatttatataatacattcaaataaagtaaacaaattaaatattgccttgtgatatatgtt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52711468 |
aaattcaaaacaatatgacataacatgaaaaatacgtaattatttatataatacattcaaataaagtaaac-----aaatattgccttgtgatatatgtt |
52711374 |
T |
|
| Q |
329 |
gctatgaggagtatccatggattgaattgctagtgagatgaaatgaaaagtaacactaattttgcattttatataggttagcagagtggaagaaagcgtc |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
52711373 |
gctatgaggagtatccatggattgaattgctagtgagatgaaatgaaaagtaacactaattttgcattttatataggttagcagagtgtaagaaagcgtc |
52711274 |
T |
|
| Q |
429 |
tcaatcaggcaaggtc |
444 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
52711273 |
tcaatcaggcaaggtc |
52711258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 46 - 360
Target Start/End: Complemental strand, 52720540 - 52720229
Alignment:
| Q |
46 |
tatgtgtacataatacattgtgatgattctgtataatttaataatgtagtattttagttcatacttatgatgaagggagctgccttccatcctccggttg |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52720540 |
tatgtgtacataatacattgtgatgattctgtataatgtaataatgtagtattt-agttcatacttatgatgaagggagctgccttccatcctccagttg |
52720442 |
T |
|
| Q |
146 |
ttcttttatcagcaatcctaccttgccgatccacacggccattgcttaccaagctactcgattccatttcctcctgttttata---aaattcaaaacaat |
242 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
52720441 |
ttcttttatcagcaatcctaccatgccgatccacgcggccattgcttaccaagctactcgattccatttcctcctgttttttttttaaatttaaaacaat |
52720342 |
T |
|
| Q |
243 |
atgacataacatgaaaaatacgtaattatttatataatacattcaaataaagtaaacaaattaaatattgccttgtgatatatgttgctatgaggagtat |
342 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
52720341 |
atgacataacatgaaaaatgtgtaattatttatataatacattcaaataaagtatac-----aaatattgccttgtaatatatattgctatgaggagtaa |
52720247 |
T |
|
| Q |
343 |
ccatggattgaattgcta |
360 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
52720246 |
ccatggattgaattgcta |
52720229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 98 - 233
Target Start/End: Complemental strand, 52697939 - 52697804
Alignment:
| Q |
98 |
tttagttcatacttatgatgaagggagctgccttccatcctccggttgttcttttatcagcaatcctaccttgccgatccacacggccattgcttaccaa |
197 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| |||| ||||||||| |||| || ||||| |
|
|
| T |
52697939 |
tttatttcatacatatgatatagggagctgccttccatcctccagttgttcgtttatcagcaatcctaccatgcctatccacacgatcattactcaccaa |
52697840 |
T |
|
| Q |
198 |
gctactcgattccatttcctcctgttttataaaatt |
233 |
Q |
| |
|
|||| || | ||||||||||||||||| |||||||| |
|
|
| T |
52697839 |
gctattcaaatccatttcctcctgtttcataaaatt |
52697804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 353 - 444
Target Start/End: Complemental strand, 52720210 - 52720119
Alignment:
| Q |
353 |
aattgctagtgagatgaaatgaaaagtaacactaattttgcattttatataggttagcagagtggaagaaagcgtctcaatcaggcaaggtc |
444 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
52720210 |
aattgttagtgagatgaaatgaaaagtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcgatcaggcagggtc |
52720119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University