View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13438_low_6 (Length: 357)
Name: NF13438_low_6
Description: NF13438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13438_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 3 - 336
Target Start/End: Complemental strand, 47577665 - 47577322
Alignment:
| Q |
3 |
aataatatgtacatatcttatctatgatagaaatagaggtt-----------acgtaatgctgcattagggaccacgagcacaaatatgggaattgggtt |
91 |
Q |
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| T |
47577665 |
aataatatgtacatatcttatctatgatagaaatagaggttccgtactaggtacgtaatgctgcattagggaccacgagcacaaatatgggaattggatt |
47577566 |
T |
|
| Q |
92 |
ttgatcctgataaggttgacacattgctgtgttttgatttagtcgtacgtgtttgtaagctttattaaacaccaaaactgtttcgtctggtcaggctcaa |
191 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
47577565 |
ttgatcctgataaggttgaaacattgctgtgttttgatttagccgtacgtgtttgtaagctttattaaacactaaaactgtatcgtctggtcaggctcaa |
47577466 |
T |
|
| Q |
192 |
agcctaattcaaaaccaaaaggaccacgagcgagagacaatttctcatggaaaatcaaggtggtttgcactggatttgggtgcgtttgttatacactttt |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47577465 |
agcctaattcaaaaccaaaaggaccacgagcgagagacaatttctcatggaaaatcaaggtggtttgcactggatttgggtgcgtttgttatacactttt |
47577366 |
T |
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| Q |
292 |
agannnnnnnnnctttataaaaaacatcacttttataattttaac |
336 |
Q |
| |
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||| ||||||||||| ||||||||||||||||||||| |
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| T |
47577365 |
aga-ttttttttctttataaaaagcatcacttttataattttaac |
47577322 |
T |
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