View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13438_low_8 (Length: 315)
Name: NF13438_low_8
Description: NF13438
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13438_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 300
Target Start/End: Original strand, 52296801 - 52297081
Alignment:
| Q |
20 |
tgtctatgagttaggatttagcttaaggttaatatagagtaaaaagttgctagtaaattcagttgtttgtgatttgttttaactgttggcttgttaacta |
119 |
Q |
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| T |
52296801 |
tgtctatcagttaggatttagcttaaggttaatatagagtaaaaagttgctagtaaattcagttgtttgtgatttgttttaactgttggcttgttaacta |
52296900 |
T |
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| Q |
120 |
ttatcaggggttggatccaaggtgtatagctaacttgttcctagatgctgaatgtgtaggggagaacgaaattaacaatgatttgtgtttcatactaaaa |
219 |
Q |
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| T |
52296901 |
ttatcaggggttggatccaaggtgtatagctaacttgttcctagatgctgaatgtgtaggggagaacgaaattaacaatgatttgtgtttcatactaaaa |
52297000 |
T |
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| Q |
220 |
ttacaaacagaacaacacatcctccaagcacaaagtacctccaatactgaaattgtaatgcacacaatattgggctacttt |
300 |
Q |
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| T |
52297001 |
ttacaaacagaacaacacatcctccaagcacaaagtacctccaatactgaaattgtaatgcacacaatattgggctacttt |
52297081 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 6827207 - 6827274
Alignment:
| Q |
118 |
tattatcaggggttggatccaaggtgtatagctaacttgttcctagatgctgaatgtgtaggggagaa |
185 |
Q |
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| T |
6827207 |
tattatcaggggctggatccaaggtgtacagccaacttgtttttagacgcagtatgtgtaggagagaa |
6827274 |
T |
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