View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13439_high_2 (Length: 453)
Name: NF13439_high_2
Description: NF13439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13439_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 11 - 436
Target Start/End: Original strand, 53581094 - 53581519
Alignment:
| Q |
11 |
aaaatgcatcagtaactaaacaagtaatgttcttccctgtctctgccacagctttaaccataacactcttatagttatctggcattgccttaatgaagat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581094 |
aaaatgcatcagtaactaaacaagtaatgttcttccctgtctctgccacagctttaaccataacactcttatagttatctggcattgccttaatgaagat |
53581193 |
T |
|
| Q |
111 |
gaaaatgggttcaagtgggtgtcctgaaggcacataaccttctggtaatccatcatgaacatcataatgctttatgttaggaagaaactcatcatagtca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581194 |
gaaaatgggttcaagtgggtgtcctgaaggcacatacccttctggtaatccatcatgaacatcataatgctttatgttaggaagaaactcatcatagtct |
53581293 |
T |
|
| Q |
211 |
tttgatccagaaaataaagcagcattttttctgcttgtgcacaagaatgaaaatgtaactttatgagcatctacagcaatccttctagcaaggctaagga |
310 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53581294 |
tttgatccagaaaataaagcggcatttgttctgcttgtgcacaagaatgaaaatgtaactttatgagcatctacagcaatccttctagcaaggttaagga |
53581393 |
T |
|
| Q |
311 |
gtggacctgcatgtgttccaaatgggaatgccaaaatggccacatgtagtttttcaacattaactgattcacctttatctctagacatccagtttttcaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53581394 |
gtggacctgcatgtgttccaaatgggaatgccaaaacggccacatgtagtttttcaacattaactgattcacctttatctctagacatccagtttttcaa |
53581493 |
T |
|
| Q |
411 |
acgtgcaattgaaaacatgtataact |
436 |
Q |
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| T |
53581494 |
acgtgcaattgaaaacatgtataact |
53581519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 11 - 358
Target Start/End: Original strand, 53567804 - 53568142
Alignment:
| Q |
11 |
aaaatgcatcagtaactaaacaagtaatgttcttccctgtctctgccacagctttaaccataacactcttatagttatctggcattgccttaatgaagat |
110 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| | | |||||| |||| |||| ||| |||| ||||||||||||| |
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| T |
53567804 |
aaaatgcatcagtaaccaaacaagtaatgttcttccctgtctctgccacagcttcatcaataacatgcttaaagttctcttgcatggccttaatgaagag |
53567903 |
T |
|
| Q |
111 |
gaaaatgggttcaagtgggtgtcctgaaggcacataaccttctggtaatccatcatgaacatcataatgctttatgttaggaagaaactcatcatagtca |
210 |
Q |
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||||| |||||| |||| | || |||| || ||||||| |||||| ||||||||||||| ||||| ||||||||| ||||||||| || |
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| T |
53567904 |
aaaaattggttcacgtggattcccagaagatacgtaaccttttggtaacccatcatgaacattataatactttatgtttggaagaaac---------tcg |
53567994 |
T |
|
| Q |
211 |
tttgatccagaaaataaagcagcattttttctgcttgtgcacaagaatgaaaatgtaactttatgagcatctacagcaatccttctagcaaggctaagga |
310 |
Q |
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||||| | ||||||||||| | ||||| || || ||||||| ||||||||||||||||||||| |||| ||| |||||| || | | |||||||||| |
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| T |
53567995 |
tttgacctagaaaataaagtatcatttgttgtggttgtgcagaagaatgaaaatgtaactttaggagcctctgtagcaatttttttcactaggctaagga |
53568094 |
T |
|
| Q |
311 |
gtggacctgcatgtgttccaaatgggaatgccaaaatggccacatgta |
358 |
Q |
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||||| | |||||||| ||||||||||||||||||| |||||||||| |
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| T |
53568095 |
gtggagcagcatgtgtgccaaatgggaatgccaaaacagccacatgta |
53568142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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