View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13439_high_8 (Length: 305)
Name: NF13439_high_8
Description: NF13439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13439_high_8 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 305
Target Start/End: Original strand, 51740358 - 51740651
Alignment:
| Q |
12 |
agcataggtaggtaattcatgcagtttcatttgtattattaaatgataactcttaatttggttattattgtatatacaggatttaaatgcagaagattgc |
111 |
Q |
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| T |
51740358 |
agcaaaggtaggtaattcatgcagtttcatttgtattattaaatgattactcttaatttggttattattgtatatacaggatttaaatgcagaagattgc |
51740457 |
T |
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| Q |
112 |
aacattgtgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccata |
211 |
Q |
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| T |
51740458 |
aacgttgtgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccata |
51740557 |
T |
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| Q |
212 |
cagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatact |
305 |
Q |
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| T |
51740558 |
cagctattgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatact |
51740651 |
T |
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Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 119 - 305
Target Start/End: Original strand, 10201260 - 10201446
Alignment:
| Q |
119 |
tgctagtagcaatagtacttaacacaataatatcaggaattattgtgtcttttctagcaagaggggaagagaaaatgttctcaaataaccatacagctat |
218 |
Q |
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| T |
10201260 |
tgctagtatcgatagtattaaacacaataatatcaggaataattgtgtcgtttatagcaaagggggaagagaaaatgttttcaaacaaccatacaacaat |
10201359 |
T |
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| Q |
219 |
tgaaccacaagagatggaagacgagcttcgaattttggcttgtgtatatgatcctcgtcaagtatcatcaatacttgcaacaatact |
305 |
Q |
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| T |
10201360 |
tgaaccacaagaaatggaagatgaacttaaaattttggcttgtgtgtatgatcctcgacaagtatctgcgatactagccacaatact |
10201446 |
T |
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