View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13439_low_1 (Length: 499)
Name: NF13439_low_1
Description: NF13439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13439_low_1 |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 19 - 481
Target Start/End: Original strand, 2623925 - 2624391
Alignment:
| Q |
19 |
caatggagattactctgtccagtttatgatccaattgctatgtaatgctaacaatcagattgaaggtgagtttggggtctgacatgtgtcagtaaccgac |
118 |
Q |
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| T |
2623925 |
caatggagattactctgtccagtttatgatccaatttctatgtaacgctaacactcagattgaaggtgagtttggggtctgacatgtgtcagtacccgac |
2624024 |
T |
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| Q |
119 |
agtgacactaactgacccattcaaatacttcatatttagcaaattatgaccagtatcgatgtgtcgatgttctgtgtccgtgtatcatagtctaattcca |
218 |
Q |
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| T |
2624025 |
agtgacactaactgacccattcaaatacttcatatttagcaaattatgaccagtatcgatgtgtcgatgttctgtgtccgtgtatcatagtctaattcca |
2624124 |
T |
|
| Q |
219 |
ttgaataaatgtcacgagtgtttcatagtcatatagcattaatttaacagtaccttttttcactacgttgctataatgaagattatatgcagtgttctta |
318 |
Q |
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| T |
2624125 |
ttgaataaatgtcacgagtgtttcatagtcatatagcattaatttaacagtaccttttttcactacgttgctataatgaagattatatgcagtgttctta |
2624224 |
T |
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| Q |
319 |
ttttgatcttgct-actgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggtataactctcaactaatttgtttgacgtgttttc |
417 |
Q |
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||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2624225 |
ttttgatcttgctaactgcagcttaacttggtcacaaaagaggatggatgcttctttcctcccaggtataactctcaactaatttgtttgatgtgttttc |
2624324 |
T |
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| Q |
418 |
tgtttcaga---tgctgaattttgaaattcttagtctaattaggtaataattagtgtcttatccact |
481 |
Q |
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| T |
2624325 |
tgtttcagatgctgctgaattttgaaattcttagtctaattaggtaataattagtgtcttatccact |
2624391 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 349
Target Start/End: Complemental strand, 21872033 - 21871956
Alignment:
| Q |
273 |
ttttttcactacgttgctataatgaagattatatgcagtgttcttattttgatcttgct-actgcagtttaacttggt |
349 |
Q |
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| T |
21872033 |
ttttttcactacaatgttataatgaagattatatgttgtgttcttattttgatcttgctaactgcagcttaatttggt |
21871956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 334 - 385
Target Start/End: Complemental strand, 16518049 - 16517998
Alignment:
| Q |
334 |
tgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggta |
385 |
Q |
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| T |
16518049 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctcccaggta |
16517998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 386
Target Start/End: Complemental strand, 16526576 - 16526524
Alignment:
| Q |
334 |
tgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggtat |
386 |
Q |
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| T |
16526576 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctaccgggtat |
16526524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 384
Target Start/End: Complemental strand, 16586669 - 16586625
Alignment:
| Q |
340 |
ttaacttggtcacaaaagaggatggatgcttctttcctcccaggt |
384 |
Q |
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| T |
16586669 |
ttaacttggtcacaaaagcgtatggatgcttctttcctaccaggt |
16586625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 386
Target Start/End: Original strand, 974 - 1026
Alignment:
| Q |
334 |
tgcagtttaacttggtcacaaaagaggatggatgcttctttcctcccaggtat |
386 |
Q |
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| T |
974 |
tgcagattaacttggtcacaaaagcgtatggatgcttctttcctacctggtat |
1026 |
T |
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