View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13439_low_11 (Length: 250)
Name: NF13439_low_11
Description: NF13439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13439_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 29362663 - 29362443
Alignment:
| Q |
26 |
tacattcattttaactcagatattaccataacaaaatctgaataatttatgcaaattaaactgatttatcaaatgtgtaaagtatgaaaataacttgtaa |
125 |
Q |
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| T |
29362663 |
tacattcattttaactcagatattaccataacaaaatctgaataatttatgcaaattaaactgatttatcaaatgtgt-aagtatgaaaataacttgtaa |
29362565 |
T |
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| Q |
126 |
actaagcttttgactttattattctataatttttcttg----atgc-----gcgtttatcacaagctatgtttagaagtcaaagtcatcaattatcataa |
216 |
Q |
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|||||| ||||||||||||||||||||||||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29362564 |
actaagattttgactttattattctataatttctcttgctataagcatcatgcgtttatcacaagctatgtttagaagtcaaagtcatcaattatcataa |
29362465 |
T |
|
| Q |
217 |
taattattcagtttgtgatatt |
238 |
Q |
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|||||||||||||| ||||||| |
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| T |
29362464 |
taattattcagtttctgatatt |
29362443 |
T |
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