View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13439_low_3 (Length: 383)
Name: NF13439_low_3
Description: NF13439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13439_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 364
Target Start/End: Original strand, 51740628 - 51740979
Alignment:
| Q |
13 |
atcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaa |
112 |
Q |
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| T |
51740628 |
atcatcaatacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaa |
51740727 |
T |
|
| Q |
113 |
tccaatttattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgattatggtggcaatgacgtcgttgaaattaataattcattagatgcat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740728 |
tccaatttattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgattatggtggcaatgacgtcgttgaaattaataattcattagatgcat |
51740827 |
T |
|
| Q |
213 |
tcactgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740828 |
tcactgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagt |
51740927 |
T |
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| Q |
313 |
atcaattatccttcttccttttcacaagcatcaacgaattgatggtaaatta |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740928 |
atcaattatccttcttccttttcacaagcatcaacgaattgatggtaaatta |
51740979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 10201430 - 10201770
Alignment:
| Q |
20 |
atacttgcaacaatactagcaatgcatggatctaaaacatcaccttcaaccacttatttaatgcacctaattgagcttgtgaagaagatcaaatccaatt |
119 |
Q |
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| T |
10201430 |
atactagccacaatactagcaatacatggctctaaaacatcaccttccaccacttatttaatgcacttaatagagcttgtgaagaaaatcaagtcaaact |
10201529 |
T |
|
| Q |
120 |
tattgtttcatgaaaaggaaaatgctgaccttagtgacgatgatgat---tatggtggcaatgacgtcgttgaaattaataattcattagatgcattcac |
216 |
Q |
| |
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| || | |||||||| ||||||| || | || || ||||| || | |||||| ||||| || || || ||||||||| | ||||| | ||||| |
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| T |
10201530 |
tgttataccatgaaaaagaaaatggcgatatcagcgatgatgacgaagcctttggtggaaatgatgtggtggacattaataatgccctagataccttcac |
10201629 |
T |
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| Q |
217 |
tgcagacacaaagattttggttcaccaaagaagggcagtatcatcttttccaagcttgtatgaagatgtttgcaatgaagctgaagatcttcaagtatca |
316 |
Q |
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|| |||||||||||||||||| || |||| |||| |||| || ||||||| ||| |||||||||| || |||| ||||| ||| ||||||||||||| |
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| T |
10201630 |
tgaagacacaaagattttggtccaacaaaaaaggacagtttcttcttttctaagtctgtatgaagaagtgtgcagcgaagcagaaaatcttcaagtatcg |
10201729 |
T |
|
| Q |
317 |
attatccttcttccttttcacaagcatcaacgaattgatgg |
357 |
Q |
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||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
10201730 |
attattcttcttccctttcacaagcatcaacgaatcgatgg |
10201770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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