View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13439_low_5 (Length: 333)
Name: NF13439_low_5
Description: NF13439
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13439_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 29679318 - 29679620
Alignment:
| Q |
18 |
attggtggatttgtttcacattgtggatggaattctattttagaaagtttgtggtatggtgtgccaatattgacatggcctatctatgcagaacaacagc |
117 |
Q |
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| T |
29679318 |
attggtggatttgtttcacattgtggatggaattctattttggaaagtatgtggtttggtgtaccaatattgacatggcctatttatgcagaacaacagc |
29679417 |
T |
|
| Q |
118 |
ttaatgcttttaggatggtgaaggaattgggattagcagtggagttgagagtgaattatagaataggtagtaaagaacttgttatggctgaggagattga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
29679418 |
ttaatgcttttaggatggtgaaggaattgggattagcagtggagttgagagtggattatagaatagggagtaaagaaattgttatggctgaggagattga |
29679517 |
T |
|
| Q |
218 |
gaaagggttgaagcatttgatggagaaagataatattttgcttaagaaagttcaagagatggctaggaatgctgttctttgtggtggatcttctttcatt |
317 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29679518 |
gaaagggttgaagaatttgatggagaaagagaatattttgcttaagaaagttcaagagatggctaggaatgctgttctttgtggtgggtcttctttcatt |
29679617 |
T |
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| Q |
318 |
tct |
320 |
Q |
| |
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||| |
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| T |
29679618 |
tct |
29679620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 29701757 - 29702014
Alignment:
| Q |
18 |
attggtggatttgtttcacattgtggatggaattctattttagaaagtttgtggtatggtgtgccaatattgacatggcctatctatgcagaacaacagc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
29701757 |
attggtggatttgtttcacattgtggatggaattctattttggaaagtatgtggtttggtgtaccaatattgacatggcctatttatgcagaacaacagc |
29701856 |
T |
|
| Q |
118 |
ttaatgcttttaggatggtgaaggaattgggattagcagtggagttgagagtgaattatagaataggtagtaaagaacttgttatggctgaggagattga |
217 |
Q |
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|||||||||||||| |||||||||||| ||| ||| ||| |||||||| | ||||||| |||||| || |||| ||| ||||||||||| |
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| T |
29701857 |
ttaatgcttttaggttggtgaaggaatggggggtaggtttgggactgagagtggactatagaaagggtagt---gatgttgtagcggccgaggagattga |
29701953 |
T |
|
| Q |
218 |
gaaagggttgaagcatttgatggagaaagataatattttgcttaagaaagttcaagagatg |
278 |
Q |
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|||||| |||||| |||||||||| ||||||| ||| | | ||||| |||||||||||| |
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| T |
29701954 |
gaaaggattgaaggatttgatggataaagatagcattgtacacaagaaggttcaagagatg |
29702014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 161
Target Start/End: Complemental strand, 20582303 - 20582163
Alignment:
| Q |
21 |
ggtggatttgtttcacattgtggatggaattctattttagaaagtttgtggtatggtgtgccaatattgacatggcctatctatgcagaacaacagctta |
120 |
Q |
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|||||||| || || |||||||| ||||| || |||||||| |||||||||| |||||||||||| || ||||| |||||||||| ||||| | | |
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| T |
20582303 |
ggtggattcgtgtcgcattgtggttggaactcgattttagagagtttgtggtttggtgtgccaattgccacgtggccggtctatgcagagcaacaaatga |
20582204 |
T |
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| Q |
121 |
atgcttttaggatggtgaaggaattgggattagcagtggag |
161 |
Q |
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|||| || |||||| | |||||||||||||||||||||| |
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| T |
20582203 |
atgcattccagatggttagggaattgggattagcagtggag |
20582163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 17781958 - 17781894
Alignment:
| Q |
21 |
ggtggatttgtttcacattgtggatggaattctattttagaaagtttgtggtatggtgtgccaat |
85 |
Q |
| |
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|||||||| || || |||||||| ||||| || || || || ||||||||||||||||||||||| |
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| T |
17781958 |
ggtggattcgtctcgcattgtggttggaactcgatattggagagtttgtggtatggtgtgccaat |
17781894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 20563140 - 20563076
Alignment:
| Q |
21 |
ggtggatttgtttcacattgtggatggaattctattttagaaagtttgtggtatggtgtgccaat |
85 |
Q |
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|||||||| || || |||||||| ||||| || || || || ||||||||||||||||||||||| |
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| T |
20563140 |
ggtggattcgtgtcgcattgtggttggaactcgatattggagagtttgtggtatggtgtgccaat |
20563076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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