View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1343_high_10 (Length: 716)
Name: NF1343_high_10
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 325 - 709
Target Start/End: Complemental strand, 32725161 - 32724771
Alignment:
| Q |
325 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacnnnnnnnnnnn-ggaacatctatgca |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
32725161 |
aaccgttgttgctgctacaatctataaaagggataaaccaacaaaataaatgtgagtacctttaaattcataacaaaaaaaaaaaaggaacaactatgca |
32725062 |
T |
|
| Q |
424 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32725061 |
attacaataggggcatttaataaaagagcattttgaagtatcaatcctcaaaacaaatgacaatgtgtctaatgaaaatcatgctgtccgcataaaccag |
32724962 |
T |
|
| Q |
524 |
taatacgtccaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttgaattgttacaaattcactagctgctcctagata |
623 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
32724961 |
taatacgtgcaaaaaatactcatcaatttgaacatggaaatagattgaaaactggcaacattagttcaattgttacaaattcaacagctgctcctagata |
32724862 |
T |
|
| Q |
624 |
caataaaacctagacctatattacatagaacatacactagtgaaa-----tgaacactcaaaataataaattaagttgctttttcatctca |
709 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32724861 |
caataaaacctagacctatattacatagaacatacactagtgaaatgaaatgaacactcaaaataataaattaagttgctttttcatctca |
32724771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 32725793 - 32725721
Alignment:
| Q |
178 |
taaagtatttgttttataagccagtactcatcatttaactttttaagtcactgcctttgtggagcatgaattc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
32725793 |
taaagtatttgttttataagccagtactcatcatttaactttttaagtcactgcctttatggagcatgaattc |
32725721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University