View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_102 (Length: 302)
Name: NF1343_high_102
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_102 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 60 - 273
Target Start/End: Original strand, 48876664 - 48876876
Alignment:
| Q |
60 |
acccctttttctatagggctagtcactagagatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
159 |
Q |
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| T |
48876664 |
acccctttttctatagggctagtcactagtgatcttagctcgaataataagaacataaagttggtacttcgaaaatactttgataattattgaacaaaaa |
48876763 |
T |
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| Q |
160 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcgttgcaaaattattaagaaatgccagtagatatgattttaccaaa |
259 |
Q |
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| T |
48876764 |
tgtaagaactataaactacttggcaatgagtgtatcacaagcattcatttttctcattgcaaaattattaagaaatgccagtagatatga-tttaccaaa |
48876862 |
T |
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| Q |
260 |
tggggccaaagctt |
273 |
Q |
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|||||||||||||| |
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| T |
48876863 |
tggggccaaagctt |
48876876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 48876557 - 48876609
Alignment:
| Q |
9 |
agcataggtactatgatgttgttgaaatgtgcagtcattttgatttctgttac |
61 |
Q |
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| T |
48876557 |
agcataggtactatgatgttgttgaaatgtgcagtcattttgatttctgttac |
48876609 |
T |
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