View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_high_107 (Length: 295)

Name: NF1343_high_107
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_high_107
NF1343_high_107
[»] chr1 (13 HSPs)
chr1 (7-279)||(42456391-42456661)
chr1 (142-279)||(38859804-38859940)
chr1 (242-279)||(7742818-7742855)
chr1 (242-279)||(29149587-29149624)
chr1 (240-279)||(5558359-5558398)
chr1 (242-279)||(3346838-3346875)
chr1 (242-279)||(5975040-5975077)
chr1 (242-279)||(49902520-49902557)
chr1 (142-279)||(10907687-10907822)
chr1 (142-279)||(48392445-48392579)
chr1 (242-279)||(23908337-23908374)
chr1 (242-279)||(47022754-47022791)
chr1 (242-270)||(42517346-42517374)
[»] chr5 (16 HSPs)
chr5 (142-279)||(10081097-10081234)
chr5 (142-279)||(8457002-8457139)
chr5 (175-279)||(11856281-11856384)
chr5 (240-279)||(39862526-39862565)
chr5 (144-279)||(9738022-9738156)
chr5 (242-279)||(23218537-23218574)
chr5 (242-279)||(37169072-37169109)
chr5 (242-279)||(38397650-38397687)
chr5 (176-279)||(25560366-25560468)
chr5 (242-279)||(6257449-6257486)
chr5 (182-279)||(42119615-42119711)
chr5 (240-279)||(19322061-19322100)
chr5 (241-279)||(29790258-29790296)
chr5 (144-220)||(2676533-2676609)
chr5 (242-279)||(33271309-33271346)
chr5 (240-276)||(614434-614470)
[»] chr4 (18 HSPs)
chr4 (142-279)||(17888589-17888726)
chr4 (142-279)||(31377342-31377479)
chr4 (142-279)||(322588-322725)
chr4 (242-279)||(1535823-1535860)
chr4 (242-279)||(34241045-34241082)
chr4 (242-279)||(36012224-36012261)
chr4 (242-279)||(49284409-49284446)
chr4 (240-279)||(9742572-9742611)
chr4 (240-279)||(12792270-12792309)
chr4 (240-279)||(47084062-47084101)
chr4 (242-279)||(25954802-25954839)
chr4 (242-279)||(46583580-46583617)
chr4 (142-279)||(50328748-50328885)
chr4 (242-279)||(52632570-52632607)
chr4 (240-279)||(10094432-10094471)
chr4 (182-278)||(35322744-35322839)
chr4 (241-279)||(11054507-11054545)
chr4 (242-279)||(5780793-5780830)
[»] chr3 (20 HSPs)
chr3 (144-279)||(20382473-20382608)
chr3 (141-279)||(54546856-54546993)
chr3 (175-279)||(1781748-1781851)
chr3 (157-279)||(43347375-43347495)
chr3 (242-279)||(23467533-23467570)
chr3 (142-279)||(36539584-36539721)
chr3 (242-279)||(40845956-40845993)
chr3 (240-279)||(10839419-10839458)
chr3 (142-220)||(19644427-19644504)
chr3 (242-279)||(5391509-5391546)
chr3 (242-279)||(8950543-8950580)
chr3 (242-279)||(21853249-21853286)
chr3 (242-279)||(32352899-32352936)
chr3 (175-279)||(19649411-19649515)
chr3 (240-279)||(22845401-22845440)
chr3 (184-280)||(48206849-48206944)
chr3 (241-279)||(3178754-3178792)
chr3 (242-279)||(44995007-44995045)
chr3 (242-279)||(13856151-13856188)
chr3 (242-279)||(47889778-47889815)
[»] chr2 (12 HSPs)
chr2 (146-279)||(1387327-1387459)
chr2 (142-279)||(6318497-6318635)
chr2 (242-279)||(14186477-14186514)
chr2 (242-279)||(14942083-14942120)
chr2 (242-279)||(19181600-19181637)
chr2 (242-279)||(42769797-42769834)
chr2 (142-278)||(28321743-28321879)
chr2 (240-279)||(43139797-43139836)
chr2 (242-279)||(29846494-29846531)
chr2 (242-279)||(40277327-40277364)
chr2 (175-279)||(14539743-14539846)
chr2 (142-276)||(41674748-41674882)
[»] chr6 (12 HSPs)
chr6 (142-279)||(9231893-9232029)
chr6 (242-279)||(28750689-28750726)
chr6 (140-273)||(11212623-11212754)
chr6 (241-279)||(8412720-8412758)
chr6 (242-279)||(1727972-1728009)
chr6 (242-279)||(13627592-13627629)
chr6 (242-279)||(14309837-14309874)
chr6 (246-279)||(24497613-24497646)
chr6 (242-279)||(24694690-24694727)
chr6 (240-279)||(13103157-13103196)
chr6 (240-279)||(27863749-27863788)
chr6 (240-279)||(34103735-34103774)
[»] chr8 (11 HSPs)
chr8 (242-279)||(22324648-22324685)
chr8 (242-279)||(35806846-35806883)
chr8 (175-279)||(2271188-2271284)
chr8 (241-279)||(24065324-24065362)
chr8 (242-279)||(21525410-21525447)
chr8 (242-279)||(26021448-26021485)
chr8 (242-279)||(33934408-33934445)
chr8 (242-279)||(42013924-42013961)
chr8 (242-279)||(42072480-42072517)
chr8 (240-279)||(16523156-16523195)
chr8 (245-279)||(16819012-16819046)
[»] chr7 (11 HSPs)
chr7 (242-279)||(10576725-10576762)
chr7 (242-279)||(24320478-24320515)
chr7 (242-279)||(34259570-34259607)
chr7 (242-279)||(34707168-34707205)
chr7 (242-279)||(44164782-44164819)
chr7 (182-279)||(10334171-10334267)
chr7 (175-279)||(33057696-33057798)
chr7 (240-279)||(19334599-19334638)
chr7 (242-279)||(29555978-29556015)
chr7 (242-279)||(32876569-32876606)
chr7 (175-279)||(17303153-17303257)


Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 7 - 279
Target Start/End: Original strand, 42456391 - 42456661
Alignment:
Q  7 tccaataatattcttatactaacatgatgacttttctttttctttcnnnnnnnnnnnnntgatgacttttctttagtaaaataaattatgacttttcctt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||| || |||||||||||||||    
T  42456391 tccaataatattcttatactaacatgatgacttttctttttctttcaaaaaaaaaaa--tgatgacttttctttagtaaaaaaatttatgacttttcctt 42456488  T
Q  107 tgatttggtaagctaagagacatcaaatgagttttagtggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatt 206  Q
    ||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||    
T  42456489 tgatttggtaagctaagagacgtcgaatgagtgttagtggcggagccaggattattgtaaggtccgggaaaaaaaaattgcaacacatttataggggatt 42456588  T
Q  207 taaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    || ||||||||||| |||||||||||       | ||||||||||||||||||||||||||||||||||||||    
T  42456589 tacataagaaattgcaagtagataataaatttttttaaagaaattgcccaatttataggggtttatataagaa 42456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 38859804 - 38859940
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntc 241  Q
    ||||||||||  ||||||||||||| |  |||| ||||| ||   |||||||||| |||||| |||| ||||||||||| ||| | |||||       ||    
T  38859804 agtggcggagtcaggattattgtaaagcccgggcaaaaaaaaaatcaacacatttatagggg-tttacataagaaattgcaagcaaataataaaaaaatc 38859902  T
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||| |||||||||||||||||||||||||||||||||    
T  38859903 taaaaaaattgcccaatttataggggtttatataagaa 38859940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 7742855 - 7742818
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  7742855 taaagaaattgcccaatttataggggtttatataagaa 7742818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 29149624 - 29149587
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  29149624 taaagaaattgcccaatttataggggtttatataagaa 29149587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 5558359 - 5558398
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5558359 tctaaagaaattgtccaatttataggggtttatataagaa 5558398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 3346838 - 3346875
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3346838 taaagaaattgtccaatttataggggtttatataagaa 3346875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 5975040 - 5975077
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  5975040 taaagaaattgcctaatttataggggtttatataagaa 5975077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 49902520 - 49902557
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||| |||||||||||||||||||||||    
T  49902520 taaagaaattgccctatttataggggtttatataagaa 49902557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 10907822 - 10907687
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntc 241  Q
    ||||||||||| |||||||||  || ||  ||| ||||| ||||||||||||||| |||| | | || ||||||||||| ||| | |||||       ||    
T  10907822 agtggcggagc-aggattattacaaagtctgggcaaaaaaaattgcaacacatttataggtg-tctacataagaaattgcaagcaaataatcaaaaaatc 10907725  T
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| |  |||||||||||||||||||||||    
T  10907724 taaagaaattgtctgatttataggggtttatataagaa 10907687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 48392579 - 48392445
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntc 241  Q
    ||||||||||| |||| |||||||| || |||| ||||| | ||||||||||||| |||||  |  | ||||||||||| ||| | |||||       |     
T  48392579 agtggcggagccaggaatattgtaaagtccgggcaaaaaaatttgcaacacatttatagggcgt--acataagaaattgcaagcaaataataaaaaa-tg 48392483  T
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||| ||||||||||||||||||||| ||||||||||||    
T  48392482 taatgaaattgcccaatttatagggatttatataagaa 48392445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 23908337 - 23908374
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  23908337 taaagaaattgtccaatttatagggatttatataagaa 23908374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 47022754 - 47022791
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  47022754 taaagaaattgcctaatttataggagtttatataagaa 47022791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 42517374 - 42517346
Alignment:
Q  242 taaagaaattgcccaatttataggggttt 270  Q
    |||||||||||||||||||||||||||||    
T  42517374 taaagaaattgcccaatttataggggttt 42517346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 10081097 - 10081234
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    ||||||||||| ||||||||||||| |  |||| |||||| ||||||||||||||| |||| | |||| ||||||||||||||| | |||||       |    
T  10081097 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggag-tttacataagaaattgtaagcaaataataaaaaaat 10081195  T
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||||||||||||||||||    
T  10081196 ctaaagaaattgcccaatttataggggtttatataagaa 10081234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 8457139 - 8457002
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    ||||||||||| | ||||||||||| |  |||| |||||| |||||||||| |||| |||||| |||| ||||||||||| ||| | |||||       |    
T  8457139 agtggcggagccaagattattgtaaagcccgggcaaaaaaaaattgcaacatatttatagggg-tttacataagaaattgcaagcaaataataaaaaaat 8457041  T
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  8457040 ctaaagaaattgcccaatttatagggggttatataagaa 8457002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 11856281 - 11856384
Alignment:
Q  175 aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatat 274  Q
    ||||||||||||||||| |||| |||| | |||| ||||||||||| ||||| |||||       ||||||||||||||||||||||||| | |||||||    
T  11856281 aaaaaataattgcaacatatttataggag-tttacataagaaattgcaagtaaataatcaaaaaatctaaagaaattgcccaatttatagtgatttatat 11856379  T
Q  275 aagaa 279  Q
    |||||    
T  11856380 aagaa 11856384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 39862565 - 39862526
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39862565 tctaaagaaattgcccaatttataggggtttatataagaa 39862526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 279
Target Start/End: Complemental strand, 9738156 - 9738022
Alignment:
Q  144 tggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntcta 243  Q
    ||||||||| ||||||||||||| |  |||  ||||| ||||||| | ||||| |||||| |||| ||||||||||| ||| | ||||        ||||    
T  9738156 tggcggagccaggattattgtaaagcccggacaaaaaaaattgcatcgcatttatagggg-tttacataagaaattgcaagcaaataaacaaaaaatcta 9738058  T
Q  244 aagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||| ||||||||||||| ||||||||||||    
T  9738057 aagaaattgtccaatttatagggatttatataagaa 9738022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 23218537 - 23218574
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23218537 taaagaaattgcccaatttataggggtttatataagaa 23218574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 37169109 - 37169072
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  37169109 taaagaaattgcccaatttataggggtttatataagaa 37169072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 38397650 - 38397687
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  38397650 taaagaaattgcccaatttataggggtttatataagaa 38397687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 25560468 - 25560366
Alignment:
Q  176 aaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatata 275  Q
    ||||| ||||||||||||||| || ||| |||| ||||||||||| ||| | |||||       ||||||||||||| |||||||||||  |||||||||    
T  25560468 aaaaaaaattgcaacacatttatatggg-tttacataagaaattgcaagcaaataataaaataatctaaagaaattgtccaatttatagatgtttatata 25560370  T
Q  276 agaa 279  Q
    ||||    
T  25560369 agaa 25560366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 6257486 - 6257449
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6257486 taaagaaattgcccaatttataggggtttgtataagaa 6257449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 42119615 - 42119711
Alignment:
Q  182 aattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||| |||||| |||| ||||||||||  ||  | |||||       ||||||||||||| ||||||||||| ||||||||||||||    
T  42119615 aattgcaacacatttatagggg-tttacataagaaattacaaacaaataataaaaaaatctaaagaaattgtccaatttatagaggtttatataagaa 42119711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 19322100 - 19322061
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||| |||||||||||||||||| |||||||||||||    
T  19322100 tctaaagtaattgcccaatttataggagtttatataagaa 19322061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 29790296 - 29790258
Alignment:
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  29790296 ctaaagaaattgcccaatttataaaggtttatataagaa 29790258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 2676609 - 2676533
Alignment:
Q  144 tggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattg 220  Q
    ||||||||| ||  ||||||||| | ||||| |||||| ||||||||||||||| |||||| |||| |||||||||||    
T  2676609 tggcggagccagatttattgtaaagctcgggcaaaaaaaaattgcaacacatttatagggg-tttacataagaaattg 2676533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 33271346 - 33271309
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||| ||||||||||||||    
T  33271346 taaagaaattgtccaatttatagaggtttatataagaa 33271309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 614470 - 614434
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataa 276  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  614470 tctaaagaaattgccaaatttatagggatttatataa 614434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 17888726 - 17888589
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcgggaaaaaata-attgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    ||||||||||| ||||||||||||| |   ||| ||||||| |||||||||||||| |||||| |||| ||||||||||| ||| | |||||       |    
T  17888726 agtggcggagccaggattattgtaaagccggggcaaaaatatattgcaacacatttatagggg-tttacataagaaattgcaagcaaataataaaaaaat 17888628  T
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  17888627 ctaaagaaattgcccaatttatagggggttatataagaa 17888589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 31377342 - 31377479
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    ||||||||||| ||||||||||||| |  |||| |||||| ||||||||||||||| ||| || |||| ||||||||||| ||| | ||| |       |    
T  31377342 agtggcggagccaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttatagcgg-tttacataagaaattgcaagcaaatagttaaaaaat 31377440  T
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||| || |||||||||||    
T  31377441 ctaaagaaattgcccaatttatagagggttatataagaa 31377479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 322725 - 322588
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    ||||||||||| |||||||||  || ||  ||| |||||| |||||||||||||||  ||| | |||| ||||||||||| ||| | |||||       |    
T  322725 agtggcggagccaggattattacaaagtctgggcaaaaaaaaattgcaacacatttacaggtg-tttacataagaaattgcaagcaaataatcaaaaaat 322627  T
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
     ||||||||||| ||||||||||||||||||||||||||    
T  322626 ttaaagaaattgtccaatttataggggtttatataagaa 322588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 1535823 - 1535860
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1535823 taaagaaattgcccaatttataggggtttatataagaa 1535860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 34241045 - 34241082
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34241045 taaagaaattgcccaatttataggggtttatataagaa 34241082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 36012261 - 36012224
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36012261 taaagaaattgcccaatttataggggtttatataagaa 36012224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 49284409 - 49284446
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  49284409 taaagaaattgcccaatttataggggtttatataagaa 49284446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 9742611 - 9742572
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  9742611 tctaaagaaattgcccaatttataggggttaatataagaa 9742572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 12792309 - 12792270
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  12792309 tctaaagtaattgcccaatttataggggtttatataagaa 12792270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 47084062 - 47084101
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  47084062 tctaaagaaattacccaatttataggggtttatataagaa 47084101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 25954802 - 25954839
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||| |||||||||||||    
T  25954802 taaagaaattgcccaatttataggagtttatataagaa 25954839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 46583617 - 46583580
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  46583617 taaagaaattgcctaatttataggggtttatataagaa 46583580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 50328748 - 50328885
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    ||||||||| | | ||||||| ||| ||| ||| |||||||| ||||||||||||| || ||| |||| |||| |||||| ||||  |||||       |    
T  50328748 agtggcggaaccaagattattataaagtttgggcaaaaaatatttgcaacacatttataaggg-tttacataaaaaattgcaagtgaataataaaaaaat 50328846  T
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
     ||||||||||| ||||||||||| ||||||||||||||    
T  50328847 ttaaagaaattgtccaatttatagaggtttatataagaa 50328885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 52632570 - 52632607
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  52632570 taaagaaattgcccaatttatagggatttatataagaa 52632607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 10094471 - 10094432
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||| ||||| |||||||||||||||||||||||||||    
T  10094471 tctaaataaattacccaatttataggggtttatataagaa 10094432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 278
Target Start/End: Complemental strand, 35322839 - 35322744
Alignment:
Q  182 aattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatataaga 278  Q
    ||||||||||| ||| |||||| |||| ||||||||||| ||| | |||||       |||||||||||||  |||||||||| |||||||||||||    
T  35322839 aattgcaacacttttatagggg-tttatataagaaattgcaagcaaataatcaaaaaatctaaagaaattgttcaatttatagaggtttatataaga 35322744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 11054507 - 11054545
Alignment:
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  11054507 ctaaagagattgcccaatttatagaggtttatataagaa 11054545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 5780830 - 5780793
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||| || ||||||||||||    
T  5780830 taaagaaattgcccaatttataaggatttatataagaa 5780793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 279
Target Start/End: Original strand, 20382473 - 20382608
Alignment:
Q  144 tggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntct 242  Q
    |||| |||| ||||||||||||| || |||| |||||| ||||||||| ||||| |||| | |||| ||||||||||| ||| | |||||       |||    
T  20382473 tggcagagccaggattattgtaaagtccgggcaaaaaaaaattgcaacgcatttataggag-tttacataagaaattgcaagcaaataataaaaaaatct 20382571  T
Q  243 aaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||| |||||||||||||||||||||||||||    
T  20382572 aaagaaatttcccaatttataggggtttatataagaa 20382608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 279
Target Start/End: Original strand, 54546856 - 54546993
Alignment:
Q  141 tagtggcggagctaggattattgtaaggttcgggaaaaaataa-ttgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnn 239  Q
    |||||||||||| ||||||||| ||| ||  || |||||| || ||| ||||||||| ||||| ||||| ||||||||||||||| | |||||           
T  54546856 tagtggcggagccaggattattataaagtctggtaaaaaaaaaattgtaacacatttataggg-atttacataagaaattgtaagcaaataatcaaaaa- 54546953  T
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  54546954 tctaaagaaattgtccaatttataggggtttatataagaa 54546993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 1781748 - 1781851
Alignment:
Q  175 aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatat 274  Q
    |||||| ||||||||||||||| |||||| |||| ||| ||||||| ||| | |||||       ||||||||||||||||||||||| |||||||||||    
T  1781748 aaaaaaaaattgcaacacatttatagggg-tttacatacgaaattgcaagcaaataatcaaaaaatctaaagaaattgcccaatttattggggtttatat 1781846  T
Q  275 aagaa 279  Q
    |||||    
T  1781847 aagaa 1781851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 279
Target Start/End: Complemental strand, 43347495 - 43347375
Alignment:
Q  157 attattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgccca 256  Q
    |||||| ||| ||| ||| ||||| |||||||||| | || |||||  |||| ||||||||||| ||| | |||||       |||||||||||||||||    
T  43347495 attattataaagtttgggcaaaaaaaattgcaacataattataggg--tttacataagaaattgcaagcaaataatcaaaaaatctaaagaaattgccca 43347398  T
Q  257 atttataggggtttatataagaa 279  Q
    |||| ||||||||||||||||||    
T  43347397 atttgtaggggtttatataagaa 43347375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 23467570 - 23467533
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  23467570 taaagaaattgcccaatttataggggtttatataagaa 23467533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 279
Target Start/End: Original strand, 36539584 - 36539721
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggga-aaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    |||||||||||||||||||||  || ||  |||  ||||| ||||||||||||||| |||||| |||| ||| ||||||| ||  | |||||       |    
T  36539584 agtggcggagctaggattattacaaagtctgggcgaaaaaaaattgcaacacatttatagggg-tttacataggaaattgcaaacaaataatcaaaaaat 36539682  T
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
     |||||||||||||||||||||||||| |||||||||||    
T  36539683 ttaaagaaattgcccaatttataggggattatataagaa 36539721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 40845993 - 40845956
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40845993 taaagaaattgcccaatttataggggtttatataagaa 40845956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 10839458 - 10839419
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  10839458 tctaaagaaattgcccaatttatagaggtttatataagaa 10839419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 220
Target Start/End: Complemental strand, 19644504 - 19644427
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattg 220  Q
    ||||||||||  ||||||||||||| ||||||| ||||| ||||| ||||||||| || |||| ||| |||||||||||    
T  19644504 agtggcggagtcaggattattgtaaagttcgggcaaaaaaaattgtaacacatttata-gggaattacataagaaattg 19644427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 5391509 - 5391546
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  5391509 taaagaaattgtccaatttataggggtttatataagaa 5391546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 8950580 - 8950543
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  8950580 taaagaaattgcccaatttatagggatttatataagaa 8950543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 21853249 - 21853286
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  21853249 taaagaaattgcccaatttatagggttttatataagaa 21853286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 32352899 - 32352936
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  32352899 taaagaaattgcctaatttataggggtttatataagaa 32352936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 19649515 - 19649411
Alignment:
Q  175 aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnn-tctaaagaaattgcccaatttataggggtttata 273  Q
    |||||| ||||||||||||||| ||||| ||| | ||||||||||| ||| | |||||        ||||||||||||| |||||||||| |||||||||    
T  19649515 aaaaaaaaattgcaacacatttatagggaatt-acataagaaattgcaagcaaataatccaaaaaatctaaagaaattgtccaatttataagggtttata 19649417  T
Q  274 taagaa 279  Q
    ||||||    
T  19649416 taagaa 19649411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 22845440 - 22845401
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  22845440 tctaaagaaattgtcaaatttataggggtttatataagaa 22845401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 184 - 280
Target Start/End: Original strand, 48206849 - 48206944
Alignment:
Q  184 ttgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatataagaat 280  Q
    ||||||||||||| || | | |||| ||||||||||| ||||| |||||       |||||| |||||| | |||||||||||||||||||||||||    
T  48206849 ttgcaacacatttataagtg-tttacataagaaattgcaagtaaataatcaaaaaatctaaaaaaattgtcaaatttataggggtttatataagaat 48206944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 3178754 - 3178792
Alignment:
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  3178754 ctaaagaaattgcccaatttatagagatttatataagaa 3178792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 44995045 - 44995007
Alignment:
Q  242 taaagaaattgcccaatttat-aggggtttatataagaa 279  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  44995045 taaagaaattgcccaatttataaggggtttatataagaa 44995007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 13856151 - 13856188
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  13856151 taaagaaattgtccaatttatagggatttatataagaa 13856188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 47889778 - 47889815
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  47889778 taaagaaattgcccaatttataggaatttatataagaa 47889815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 279
Target Start/End: Complemental strand, 1387459 - 1387327
Alignment:
Q  146 gcggagctaggattattgtaaggttcgggaaaaaataatt-gcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaa 244  Q
    ||||||| ||||||||||||| ||||||| ||||| |||| ||||||||||| || ||| |||| ||||||||||| ||| | |||||       |||||    
T  1387459 gcggagccaggattattgtaaagttcgggtaaaaaaaatttgcaacacatttgtaaggg-tttacataagaaattgcaagcaaataataaaaaa-tctaa 1387362  T
Q  245 agaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||| |||||||||||||||||||| ||||||    
T  1387361 agaaattacccaatttataggggtttatctaagaa 1387327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 6318635 - 6318497
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggg-aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnn- 239  Q
    |||||||||| |||||||||||||| |  |||| |||||| ||||||||||||||| |||||| || | ||  ||||||| ||| | |||||            
T  6318635 agtggcggagttaggattattgtaaagcccgggcaaaaaaaaattgcaacacatttataggggctt-acatttgaaattgcaagcaaataataaaaaaaa 6318537  T
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  6318536 tctaaagaaattgcccaatttatagggatttatataagaa 6318497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 14186514 - 14186477
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14186514 taaagaaattgcccaatttataggggtttatataagaa 14186477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 14942120 - 14942083
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14942120 taaagaaattgcccaatttataggggtttatataagaa 14942083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 19181600 - 19181637
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  19181600 taaagaaattgcccaatttataggggtttatataagaa 19181637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 42769834 - 42769797
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42769834 taaagaaattgcccaatttataggggtttatataagaa 42769797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 142 - 278
Target Start/End: Complemental strand, 28321879 - 28321743
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcgggaaaa-aataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnnt 240  Q
    ||||||||||| ||||||||| ||| ||  ||| ||| || ||||||||||||||| |||||| |||| ||||||||||| ||| | |||||       |    
T  28321879 agtggcggagccaggattattataaagtctgggcaaataaaaattgcaacacatttatagggg-tttatataagaaattggaagcaaataatcaaaaaat 28321781  T
Q  241 ctaaagaaattgcccaatttataggggtttatataaga 278  Q
      || |||||||||||||||||| ||||||||||||||    
T  28321780 tcaatgaaattgcccaatttataagggtttatataaga 28321743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 43139797 - 43139836
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  43139797 tctaaagaaattgctcaatttataggggtttatataagaa 43139836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 29846494 - 29846531
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  29846494 taaagaaattgtccaatttataggggtttatataagaa 29846531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 40277364 - 40277327
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  40277364 taaagaaattgcccaatttatagggatttatataagaa 40277327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 14539846 - 14539743
Alignment:
Q  175 aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatat 274  Q
    |||||| | ||||||||||||| |||| | |||| ||||||||||| ||| | |||||       ||||||||||||||| ||||||||||  |||||||    
T  14539846 aaaaaaaatttgcaacacatttataggtg-tttatataagaaattgcaagaaaataataaaaaaatctaaagaaattgcctaatttataggaatttatat 14539748  T
Q  275 aagaa 279  Q
    |||||    
T  14539747 aagaa 14539743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 276
Target Start/End: Complemental strand, 41674882 - 41674748
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnn-t 240  Q
    ||||||||||| ||||||||  ||| ||  | ||||||| | ||||||||||||| ||||| ||||| ||||||||||| ||| | ||| |        |    
T  41674882 agtggcggagccaggattatcataaagtctgagaaaaaaaatttgcaacacatttataggg-atttatataagaaattgcaagcaaatagttaaaaaaat 41674784  T
Q  241 ctaaagaaattgcccaatttataggggtttatataa 276  Q
    |||||||||||| |||||||||| ||||||||||||    
T  41674783 ctaaagaaattgtccaatttataagggtttatataa 41674748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 279
Target Start/End: Complemental strand, 9232029 - 9231893
Alignment:
Q  142 agtggcggagctaggattattgtaaggttcggg--aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnn 239  Q
    ||||||||||| |||| |||||||| |  ||||  |||||| ||||||||||||||| ||||| ||  | ||||||||||| ||| | |||||           
T  9232029 agtggcggagccaggaatattgtaaagcccgggcaaaaaaaaaattgcaacacatttatagggcat--acataagaaattgcaagcaaataataaaaaa- 9231933  T
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  9231932 tgtaaagaaattgcccaatttataggggtttatataagaa 9231893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 28750726 - 28750689
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  28750726 taaagaaattgcccaatttataggggtttatataagaa 28750689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 273
Target Start/End: Original strand, 11212623 - 11212754
Alignment:
Q  140 ttagtggcggagctaggattattgtaaggttcgggaaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnn 239  Q
    ||||||| ||||| || |||||| ||||| | ||||||||| ||| ||||||||||| ||||  ||||| ||||||||||  ||| | |||||           
T  11212623 ttagtggtggagccagaattattataaggattgggaaaaaaaaatcgcaacacatttatagga-atttacataagaaattacaagcaaataattaaaaa- 11212720  T
Q  240 tctaaagaaattgcccaatttataggggtttata 273  Q
    ||||||||||||||||||||||||||| ||||||    
T  11212721 tctaaagaaattgcccaatttatagggatttata 11212754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 8412758 - 8412720
Alignment:
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  8412758 ctaaagaaattgcccaatttataggcgtttatataagaa 8412720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 1728009 - 1727972
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||| |||||||||||||||||||||||||    
T  1728009 taaagaaattgctcaatttataggggtttatataagaa 1727972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 13627592 - 13627629
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||| |||||||||||||||||||||||||    
T  13627592 taaagaaattgctcaatttataggggtttatataagaa 13627629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 14309874 - 14309837
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14309874 taaagaaattgcccaatttatagggatttatataagaa 14309837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 24497646 - 24497613
Alignment:
Q  246 gaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||    
T  24497646 gaaattgcccaatttataggggtttatataagaa 24497613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 24694727 - 24694690
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||| |||||||||||||    
T  24694727 taaagaaattgcccaatttataggagtttatataagaa 24694690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 13103196 - 13103157
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  13103196 tctaaagaaattgcccaatttataaaggtttatataagaa 13103157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 27863749 - 27863788
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| |||||||||| |||||||||||||||    
T  27863749 tctaaagaaattgtccaatttataagggtttatataagaa 27863788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 34103735 - 34103774
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  34103735 tctaaagaaatttcccaatttatacgggtttatataagaa 34103774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 22324648 - 22324685
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  22324648 taaagaaattgcccaatttataggggtttatataagaa 22324685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 35806846 - 35806883
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35806846 taaagaaattgcccaatttataggggtttatataagaa 35806883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 279
Target Start/End: Original strand, 2271188 - 2271284
Alignment:
Q  175 aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatat 274  Q
    |||||| | ||||||||||||| |||||| |||| ||||||||||||||||| | ||        |||||||||||| || ||| |||||||||||||||    
T  2271188 aaaaaaaatttgcaacacatttatagggggtttacataagaaattgtaagtaaaaaa--------tctaaagaaattacctaatatataggggtttatat 2271279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 24065324 - 24065362
Alignment:
Q  241 ctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  24065324 ctaaagaaattgcccaatttataggagtttatataagaa 24065362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 21525410 - 21525447
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  21525410 taaagaaattgtccaatttataggggtttatataagaa 21525447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 26021448 - 26021485
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||| |||||||||||||||||||||||||||    
T  26021448 taaagaaattacccaatttataggggtttatataagaa 26021485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 33934445 - 33934408
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||| |||||||||||||||||||||||||||||||||    
T  33934445 taaaaaaattgcccaatttataggggtttatataagaa 33934408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 42013924 - 42013961
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    |||||||||||||||||||||||| |||||||||||||    
T  42013924 taaagaaattgcccaatttataggagtttatataagaa 42013961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 42072480 - 42072517
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  42072480 taaagaaattgtccaatttataggggtttatataagaa 42072517  T

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Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 240 - 279
Target Start/End: Original strand, 16523156 - 16523195
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  16523156 tctaaagaagttgcccaatttatagggatttatataagaa 16523195  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 279
Target Start/End: Complemental strand, 16819046 - 16819012
Alignment:
Q  245 agaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||| |||||||||||||||||||||||||||    
T  16819046 agaaattacccaatttataggggtttatataagaa 16819012  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 10576725 - 10576762
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  10576725 taaagaaattgcccaatttataggggtttatataagaa 10576762  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 24320515 - 24320478
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24320515 taaagaaattgcccaatttataggggtttatataagaa 24320478  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 34259570 - 34259607
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34259570 taaagaaattgcccaatttataggggtttatataagaa 34259607  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Original strand, 34707168 - 34707205
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34707168 taaagaaattgcccaatttataggggtttatataagaa 34707205  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 44164819 - 44164782
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44164819 taaagaaattgcccaatttataggggtttatataagaa 44164782  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 10334171 - 10334267
Alignment:
Q  182 aattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||||| |||||| |||| ||||||||||| ||| | ||| |       |||||||||||||||||||||||| | |||||||||||||    
T  10334171 aattgcaacacatttatagggg-tttacataagaaattgcaagcaaatattaaaaatatctaaagaaattgcccaatttataagagtttatataagaa 10334267  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 33057798 - 33057696
Alignment:
Q  175 aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnntctaaagaaattgcccaatttataggggtttatat 274  Q
    |||||| ||||||||||||||| ||||  ||||| ||||||||||| ||| | |||||       |||||||||||||  ||||||||||||| ||||||    
T  33057798 aaaaaaaaattgcaacacatttatagg--atttacataagaaattgcaagcaaataataaaaaaatctaaagaaattgttcaatttataggggattatat 33057701  T
Q  275 aagaa 279  Q
    |||||    
T  33057700 aagaa 33057696  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 279
Target Start/End: Complemental strand, 19334638 - 19334599
Alignment:
Q  240 tctaaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  19334638 tctaaagaaattgtccaatttataggggtttatataagaa 19334599  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 29556015 - 29555978
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  29556015 taaagaaattgtccaatttataggggtttatataagaa 29555978  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 32876606 - 32876569
Alignment:
Q  242 taaagaaattgcccaatttataggggtttatataagaa 279  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  32876606 taaagaaattgtccaatttataggggtttatataagaa 32876569  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 279
Target Start/End: Complemental strand, 17303257 - 17303153
Alignment:
Q  175 aaaaaataattgcaacacatttttaggggatttaaataagaaattgtaagtagataatnnnnnnn-tctaaagaaattgcccaatttataggggtttata 273  Q
    |||||| ||||||||||||||| ||| || |||| ||||||||||| ||| | |||||        |||||||||||||||||||||| | |||||||||    
T  17303257 aaaaaaaaattgcaacacatttatagtgg-tttacataagaaattgcaagcaaataataaaaaaaatctaaagaaattgcccaatttacaagggtttata 17303159  T
Q  274 taagaa 279  Q
    ||||||    
T  17303158 taagaa 17303153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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