View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_109 (Length: 292)
Name: NF1343_high_109
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_109 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 35 - 251
Target Start/End: Complemental strand, 43600082 - 43599865
Alignment:
| Q |
35 |
ctaagcttacggagataagatatggttaatttaatcaaggcatatgatttattcggttatataagtaattaactcaatttaagttgaaattgtggttact |
134 |
Q |
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| T |
43600082 |
ctaagtttacggagataaaatatggttaatttaatcaaggcatatgatttattcggttatataagtaattaactcaatttaagttgaaattgtggttact |
43599983 |
T |
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| Q |
135 |
tcgtgtaattgagctaacagaaattttaattcaaatgatttaattcaaatagttaataaattcatatcgtagttgctcaattagcatagttcttttcttc |
234 |
Q |
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| T |
43599982 |
tcgtgtaattgagctaacagaaattttaattcaaatgatttaattcaaatagttaataaattcatatcgtagttgctcaattagcatagttcttttcttc |
43599883 |
T |
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| Q |
235 |
a-tttaaatgtaatatac |
251 |
Q |
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| T |
43599882 |
attttaaatgtaatatac |
43599865 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 37
Target Start/End: Original strand, 31581832 - 31581863
Alignment:
| Q |
6 |
aaaatatccattggatttgaatgcaacagcta |
37 |
Q |
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| T |
31581832 |
aaaatatccattggatttgaatgcaacagcta |
31581863 |
T |
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