View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1343_high_110 (Length: 292)

Name: NF1343_high_110
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1343_high_110
NF1343_high_110
[»] chr8 (1 HSPs)
chr8 (49-129)||(11389547-11389627)
[»] chr5 (2 HSPs)
chr5 (168-236)||(36650993-36651061)
chr5 (171-236)||(36642376-36642441)
[»] chr3 (1 HSPs)
chr3 (49-129)||(21738127-21738207)
[»] chr1 (1 HSPs)
chr1 (57-114)||(39433143-39433200)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 11389627 - 11389547
Alignment:
Q  49 caccacagacacagaccttcgcccctctcagggcctgaagccggaaagacaaaacatcccacagaattctcctatctctgc 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||    
T  11389627 caccacagacacagaccttcgcccctctcagggcctgaagccggatagacaaaacatcccacagaattctccgatcactgc 11389547  T

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Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 36651061 - 36650993
Alignment:
Q  168 tgatgagtatccaaaaaagcgttttggcgaagccaacatttataatagtctgatattggctaaggatga 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36651061 tgatgagtatccaaaaaagcgttttggcgaagccaacatttataatagtttgatattggctaaggatga 36650993  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 36642376 - 36642441
Alignment:
Q  171 tgagtatccaaaaaagcgttttggcgaagccaacatttataatagtctgatattggctaaggatga 236  Q
    ||||||||||||| ||| ||||||| |||||||| ||||||| | |||| ||||||||||||||||    
T  36642376 tgagtatccaaaacagcattttggcaaagccaacgtttataacaatctggtattggctaaggatga 36642441  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 21738207 - 21738127
Alignment:
Q  49 caccacagacacagaccttcgcccctctcagggcctgaagccggaaagacaaaacatcccacagaattctcctatctctgc 129  Q
    ||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||| ||||| ||| ||||    
T  21738207 caccacagacacaaaccttcgcccctctcagggcctgaagccgaatagtcaaaacatcccacagaagtctccgatcactgc 21738127  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 39433143 - 39433200
Alignment:
Q  57 acacagaccttcgcccctctcagggcctgaagccggaaagacaaaacatcccacagaa 114  Q
    ||||| ||||||||||||||||| ||| ||||||| | ||||||  ||||||||||||    
T  39433143 acacaaaccttcgcccctctcagtgcccgaagccgaatagacaactcatcccacagaa 39433200  T

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