View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_111 (Length: 290)
Name: NF1343_high_111
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_111 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 29 - 285
Target Start/End: Original strand, 40051764 - 40052017
Alignment:
| Q |
29 |
accttgagtaattaatcagagtgacagtcgtcacacatgagatggatcaacaccaacagacttaagagtctcagcacgaggttgataagcaaaagcatct |
128 |
Q |
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| T |
40051764 |
accttgagtaattaataagagtgacagtc---acacatgagatggatcaacaccaacagacttaagagtctcagcacgaggttgataagcaaaagcatct |
40051860 |
T |
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| Q |
129 |
ctgtgaatcggactagaaacttggttatgatcaggataactacgttcctgaacatgtgcaattttcctaaagaatgaactcttaaagaatctatcagatt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40051861 |
ctgtgaatcggactagaaacttggttatgatcaggataactacgttcctgaacatgtgcaattttcctaaagaatgaactcttaaagaatctatcagatt |
40051960 |
T |
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| Q |
229 |
cctccataacatgatcgggttccactacttcaggaacagtctctctcctttgcttct |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40051961 |
cctccataacatgatcgggttccactacttcaggaacagtctctctcctttgtttct |
40052017 |
T |
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