View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_119 (Length: 263)
Name: NF1343_high_119
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_119 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 42 - 238
Target Start/End: Original strand, 4900028 - 4900222
Alignment:
| Q |
42 |
tctctttctgtaacggagctttgctggaccatatcaccttcacatgcaccctttaggggaagccacaccccattacaactacttgaaattacttaaaggc |
141 |
Q |
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| T |
4900028 |
tctctttctgtaacggagctttgctggaccatatcaccttcacatgcaccctttaggggaagccacaccccattacaactacttgaaattacttaaaggc |
4900127 |
T |
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| Q |
142 |
cctcacattctatttcataagagaaatgatatttctattttctaccactatttgcgaacaatttttgaaacgactctctcatattttcattgtgttc |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||| |
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| T |
4900128 |
cctcacattctatttcataagagaaatgatatttctattttctaccactatttgaggacaatttttgaaacga--ctctcatattttcattgtgttc |
4900222 |
T |
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