View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_12 (Length: 687)
Name: NF1343_high_12
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 111 - 659
Target Start/End: Original strand, 116510 - 117063
Alignment:
| Q |
111 |
acagatcatgtaacccagacgatgaattacttattactgtgttttttgagaccggattctcagtggtggctagcatatcaaacacctaagtcttattcga |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116510 |
acagatcatgtaacccagacgatgaattacttattactgtgttttttgagaccaggttctcagtggtggctagcatatcaaacacctaagtcttattcga |
116609 |
T |
|
| Q |
211 |
ctgatatggatttacattgcccatcctgcttgattaatttcttccatttccgagttattctac----acttgtgagctcagagaatgataccatggccat |
306 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||||| |
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| T |
116610 |
ctgatatggatttacattgctcatcctgcttgattaatttcttccctttccgagttgttctacgtacacttgtgggctcagagaatgataccatggccat |
116709 |
T |
|
| Q |
307 |
ttttcgtgactgggaaagaatcgatttcgatgcccatctcaagcattctcttatttgctagcttaaacataccctcattattttttaatagattttcaaa |
406 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116710 |
ttttcgtgactgggaaagaatcgatttcgatgtccatctcaagcattctcttatttgctagcttaaacataccctcattattttttaatagattttcaaa |
116809 |
T |
|
| Q |
407 |
tgacaatgcaattaaatgttgagtggttgttggagttgcctatgatgtcctcagcttgaggaatcttatgactatctaatatccggatttgcttatactt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
116810 |
tgacaatgcaattaaatgttgagtggttgttggagttgcctatgatgtcctcagcttgaggaatcttatgactatctaatatccggatttgcttatactt |
116909 |
T |
|
| Q |
507 |
aagcagataatcaaataattggccagccttatgtcaaaggcttataacattctatctt-tgatgaacttatgtcatacccttaggaggaccttaaggcag |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
116910 |
aagcagataatcaaataattggccagccttatgtcaaaggcttataacattcaatcttctgatgaacttatgtcattcccttaggaggaccttaaggcag |
117009 |
T |
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| Q |
606 |
gccatgtataacttttctcttttaggatctcaatcgttagaatgtctactgttg |
659 |
Q |
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| T |
117010 |
gccatgtataacttttctcttttaggatctcaatcgttagaatgtctactgttg |
117063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 116287 - 116333
Alignment:
| Q |
35 |
aatcaattctaccatttgattcatgtcttcttctgttaggaatccac |
81 |
Q |
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| T |
116287 |
aatcaattctaccatttgattcatgtcttcttccgttagaaatccac |
116333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 113
Target Start/End: Original strand, 116423 - 116455
Alignment:
| Q |
81 |
cagctgaggtcattggtgtatcgagttcctaca |
113 |
Q |
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| T |
116423 |
cagctgaggtcattggtgtatcgagttcctaca |
116455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 682
Target Start/End: Complemental strand, 31581860 - 31581832
Alignment:
| Q |
654 |
ctgttgcattcaaatccaatggatatttt |
682 |
Q |
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| T |
31581860 |
ctgttgcattcaaatccaatggatatttt |
31581832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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