View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_121 (Length: 259)
Name: NF1343_high_121
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_121 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 3535865 - 3536119
Alignment:
| Q |
5 |
atactttgagtttatactcaagtaggtgagtttgataaaaagacagcataagaatcaatatcatgttattcattgtagggtttctacatttttgttccct |
104 |
Q |
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| T |
3535865 |
atactttgagtttatactcaagtaggtgagtttgataaaaagacaacataagaatcaatatcatgttattcattgtagggtttctacatttttgttccct |
3535964 |
T |
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| Q |
105 |
ctcagtgcttccctgcaaaatgaagctggatttgccatttctgaatctcacatagttaggagttgtgaatcacatgaattgcatggtttgagttcagtca |
204 |
Q |
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| T |
3535965 |
ctcagtgcttccctgcaaaatgaagctggatttgccatttctgaatctcacatagttaggagttgtgaatcacatgaattgcatggtttgagttcagtca |
3536064 |
T |
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| Q |
205 |
tgggtgcatcccaaaaacaaaccaccttgcgtgacttggttttaaaatgtttttg |
259 |
Q |
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| T |
3536065 |
tgggtgcatcccaaaaacaaaccaccttgcgtgacttggttttaaaatgtttttg |
3536119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 3481043 - 3480925
Alignment:
| Q |
11 |
tgagtttatactcaagtaggtgagtttgataaaaagacagcataagaatcaatatcatgttattcattgtagggtttctacatttttgttccctctcagt |
110 |
Q |
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| T |
3481043 |
tgagtttatactcaattagg-gagtctgatagaaaggcaacatcagaaccaataacatgtatttcgtcgtaggatttctacacttttgttccccctcaat |
3480945 |
T |
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| Q |
111 |
gcttccctgcaaaatgaagc |
130 |
Q |
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| T |
3480944 |
gcttcccttcaaaatgaagc |
3480925 |
T |
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