View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_125 (Length: 251)
Name: NF1343_high_125
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_125 |
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| [»] chr3 (5 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 1843817 - 1843596
Alignment:
| Q |
30 |
tttcctacagattattgtttcccaagttcttttctgcacaacccatgggctcttgcttttggcaaatgtatatgccaatctgaacataatgtcttgtctg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1843817 |
tttcctacagattattgtttcccaagttcttttctgcacaacccatgagctcttgcttttggcaaatgtatatgccaatctgaatataatgtcttgtctg |
1843718 |
T |
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| Q |
130 |
tcgatctcatgccaaacctgtaattctcatatagttctaaactttcaattaaaggctgagatctgttatgcacccctcttttgttaaggatacaatgaag |
229 |
Q |
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||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1843717 |
tcgatctcatgccaaacctataattctcatatagttctgaactttcaattaaaggctgagatctgttatgcgcccctcttttgttaaggatacaatgaag |
1843618 |
T |
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| Q |
230 |
ctactatcacagtatttgtctc |
251 |
Q |
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||||||||| |||||||||||| |
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| T |
1843617 |
ctactatcagagtatttgtctc |
1843596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 1839395 - 1839616
Alignment:
| Q |
30 |
tttcctacagattattgtttcccaagttcttttctgcacaacccatgggctcttgcttttggcaaatgtatatgccaatctgaacataatgtcttgtctg |
129 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
1839395 |
tttcctacaaattattgtttcccaagttctttttagcacaacccatgggctcttgcttttggcaaatgtatatgccaatctaaacatagtgtcttgtctg |
1839494 |
T |
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| Q |
130 |
tcgatctcatgccaaacctgtaattctcatatagttctaaactttcaattaaaggctgagatctgttatgcacccctcttttgttaaggatacaatgaag |
229 |
Q |
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| T |
1839495 |
tcgatctcatgtcaaacctgtaattctcatgtagttctgaactttcaattaaaggcttagatctgttatgcgcccttgtcttgttaaggatactatgaag |
1839594 |
T |
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| Q |
230 |
ctactatcacagtatttgtctc |
251 |
Q |
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| T |
1839595 |
ctactatcacaatctttgtctc |
1839616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 41381008 - 41380839
Alignment:
| Q |
30 |
tttcctacagattattgtttcccaagttcttttctgcacaacccatgggctcttgcttttggcaaatgtatatgccaatctgaacata--atgtcttgtc |
127 |
Q |
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| T |
41381008 |
tttcctacaaattattgtttcccaagttcttttctgcaca-cccatgggctcttgcttttggcaaatgtatatgccaacctgaacatataacgtattgtc |
41380910 |
T |
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| Q |
128 |
tgtcgatctcatgccaaacctgtaattctcatatagttctaaactttcaattaaaggctgagatctgttat |
198 |
Q |
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| T |
41380909 |
tgtcgatctcatgccaaacttgtaattctcatatagttctgaactttcaattaaagtctgagatatgttat |
41380839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 41381153 - 41381098
Alignment:
| Q |
30 |
tttcctacagattattgtttcccaagttcttttctgcacaacccatgggctcttgct |
86 |
Q |
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| T |
41381153 |
tttcctacaaattattgtttcccaagttcttttctgcac-acccatgggctcttgct |
41381098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 251
Target Start/End: Complemental strand, 41380614 - 41380557
Alignment:
| Q |
194 |
gttatgcacccctcttttgttaaggatacaatgaagctactatcacagtatttgtctc |
251 |
Q |
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| T |
41380614 |
gttatgcacccctctcttgttaaggatgcaacgaagctactatcacaatctttgtctc |
41380557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 30 - 251
Target Start/End: Original strand, 18634092 - 18634313
Alignment:
| Q |
30 |
tttcctacagattattgtttcccaagttcttttctgcacaacccatgggctcttgcttttggcaaatgtatatgccaatctgaacataatgtcttgtctg |
129 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||| || |
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| T |
18634092 |
tttcctacagattcttgtttcccaagttcttttctgcacaacccatgggctcttgcttttggcaaatgtatatgtcaatttgaacatagtgtcttgtgtg |
18634191 |
T |
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| Q |
130 |
tcgatctcatgccaaacctgtaattctcatatagttctaaactttcaattaaaggctgagatctgttatgcacccctcttttgttaaggatacaatgaag |
229 |
Q |
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| T |
18634192 |
tcgatctcatgtcaaacctgtaattctcatatagttctgaactttcaattaaaggctgagatctgttatgcgcccctcttttgttaaggatacaatgaag |
18634291 |
T |
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| Q |
230 |
ctactatcacagtatttgtctc |
251 |
Q |
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|||||||||| |||||||||| |
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| T |
18634292 |
ttactatcacaatatttgtctc |
18634313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 18638033 - 18637812
Alignment:
| Q |
30 |
tttcctacagattattgtttcccaagttcttttctgcacaacccatgggctcttgcttttggcaaatgtatatgccaatctgaacataatgtcttgtctg |
129 |
Q |
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||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |
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| T |
18638033 |
tttcctacaaattattgtttcccaagttctttttagcacaatccatgggctcttgcttttggcaaatgtatatgtcaatctgaacatagtgtcctgtctg |
18637934 |
T |
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| Q |
130 |
tcgatctcatgccaaacctgtaattctcatatagttctaaactttcaattaaaggctgagatctgttatgcacccctcttttgttaaggatacaatgaag |
229 |
Q |
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||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||| ||||| ||||||| ||| | | ||||| ||||||| |||||| |
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| T |
18637933 |
tcgatctcatgtcaaacctgtaattctcatgtagttttgaactttcaattaaaggcttagatcggttatgcgcccttgtcttgttgaggatactatgaag |
18637834 |
T |
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| Q |
230 |
ctactatcacagtatttgtctc |
251 |
Q |
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| T |
18637833 |
ctactatcacaatctttgtctc |
18637812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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