View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_127 (Length: 251)
Name: NF1343_high_127
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_127 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 8893291 - 8893526
Alignment:
| Q |
16 |
atacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaatnnnnnnnnnnnnnnnnnnnnctaaca |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8893291 |
atacaatttctgttacacaaaaagcacccatatgcaagaatacctactgattttagaatcattaaaatgtgaa--gaaaaaaaaagaaaaaaaactaaca |
8893388 |
T |
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| Q |
116 |
--cattaatatactttattacacgcaaatgaagctataatttaaactgctttttgttctccacaagttttcttaaaaacccgattccatttggaaatatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8893389 |
cacattaatatactttattacacgcaaatgaagctataatttaaactgctttttgttccccacaagttttcttaaaaacccgattccatttggaaatatt |
8893488 |
T |
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| Q |
214 |
gttctgcatggaaaaacacggttttgtctaactcactc |
251 |
Q |
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|||||||| |||||||||| |||||||||||||||||| |
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| T |
8893489 |
gttctgcacggaaaaacacagttttgtctaactcactc |
8893526 |
T |
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