View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_138 (Length: 228)
Name: NF1343_high_138
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_138 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 45801060 - 45801226
Alignment:
| Q |
23 |
atgaactcatacaagcataaatcaatcaacaaatgaatcaatcgcagaaatcaaaaaccgacagttcataaatcataactgaaatcacaattccaaaatt |
122 |
Q |
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| T |
45801060 |
atgaactcatacaagcataaatcaatcaacaaatgaatcaatcgcagaaatcaaaaaccgacagttcataaatcataactgaaatcacaattccaaaatt |
45801159 |
T |
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| Q |
123 |
caacagaatcgaagtgagttcgttaccggcgggaacatgattaagcgaaattccggtgctcgaaagc |
189 |
Q |
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| T |
45801160 |
caacagaatcgaagtgagttcgttaccggcgggaacatgattaagcgaaattccggtgctagaaagc |
45801226 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 191 - 223
Target Start/End: Complemental strand, 31581864 - 31581832
Alignment:
| Q |
191 |
ctagctgttgcattcaaatccaatggatatttt |
223 |
Q |
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| T |
31581864 |
ctagctgttgcattcaaatccaatggatatttt |
31581832 |
T |
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