View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_15 (Length: 671)
Name: NF1343_high_15
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-163; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 94 - 397
Target Start/End: Complemental strand, 7588308 - 7588005
Alignment:
| Q |
94 |
gttgattctcacgtacaactaaattgcaattgcatccagtgtaaaggtgatttaactccattgtatggttgctgtagattatagctttggatccagaccg |
193 |
Q |
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| T |
7588308 |
gttgattctcacgtacaactaaattgcaattgcatccagtgtaaaggtgatttaactccattgtatggttgctgtagattatagctttggatccagaccg |
7588209 |
T |
|
| Q |
194 |
aaaagcttatgaagcaggacttccattcatcaaaaaggctggtgtagaacacaaaattgacttcatagagtctccagctttaccagttcttgataaactc |
293 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
7588208 |
aaaagcttatgaagtaggacttccattcatcaaaaaggctggtgtagaacacaaaattgacttcacagagtctccagctttaccagttcttgataaactc |
7588109 |
T |
|
| Q |
294 |
ttagaagatgtgagtattcataacacttggcctaaaacttgtttatgttttggacattgttttaaattgcagttgtggttaaactgcgaacctttatgtt |
393 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7588108 |
ttagaagatgtgagtattcataactcttggcctaaaacttgtttatgttttggacattgttttaaattgcagttgtggttaaactgcgaacctttatgtt |
7588009 |
T |
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| Q |
394 |
gcgg |
397 |
Q |
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|||| |
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| T |
7588008 |
gcgg |
7588005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 550 - 661
Target Start/End: Complemental strand, 7587791 - 7587680
Alignment:
| Q |
550 |
caaccatttctaattttggtgtcttcactatttctagtttgttggcaagtgatttgattttgctatatatgtttgcagccttcaaatgatgaaaattttg |
649 |
Q |
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| T |
7587791 |
caaccgtttctaattttagtgtcttcactatttctagtttgttggctagtgatttgattttgctatatatgtttgcagccttcaaatgatgaaaattttg |
7587692 |
T |
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| Q |
650 |
actttgcctttg |
661 |
Q |
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|||||||||||| |
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| T |
7587691 |
actttgcctttg |
7587680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 403 - 513
Target Start/End: Complemental strand, 7587937 - 7587827
Alignment:
| Q |
403 |
tcagcttagtagagctgtttgcaccccctcaagaacggtcctggttacagttgcatatcacaatttaaaactatgactattacttttttgcttaattttc |
502 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7587937 |
tcagcttagtagagctgtttgcaccccctcaaaaacggtcctggttacggttgcagatcacaatttaaaactatgactattacttttttgcttaattttc |
7587838 |
T |
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| Q |
503 |
aatactactat |
513 |
Q |
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||||||||||| |
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| T |
7587837 |
aatactactat |
7587827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 42830803 - 42830949
Alignment:
| Q |
163 |
tgctgtagattatagctttggatccagaccgaaaagcttatgaagcaggacttccattcatcaaaaaggctggtgtagaacacaaaattgacttcataga |
262 |
Q |
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|||||||||||| ||| | ||||||||| ||||||||||||| ||||||||||||||| |||||||| ||||| |||||| ||||||| |||||| |
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| T |
42830803 |
tgctgtagattacagccgtagatccagacagaaaagcttatgagataggacttccattcataaaaaaggccggtgtcttacacaagattgactacataga |
42830902 |
T |
|
| Q |
263 |
gtctccagctttaccagttcttgataaactcttagaagatgtgagta |
309 |
Q |
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|||||||||||| || |||||||||||||||||||| ||||| |||| |
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| T |
42830903 |
gtctccagctttgccggttcttgataaactcttagatgatgtaagta |
42830949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 401 - 435
Target Start/End: Original strand, 33978676 - 33978710
Alignment:
| Q |
401 |
gctcagcttagtagagctgtttgcaccccctcaag |
435 |
Q |
| |
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|||||||| |||||||||||||||||||||||||| |
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| T |
33978676 |
gctcagctcagtagagctgtttgcaccccctcaag |
33978710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 9491966 - 9492007
Alignment:
| Q |
404 |
cagcttagtagagctgtttgcaccccctcaagaacggtcctg |
445 |
Q |
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||||| |||||||||||||||||||||||||| |||| |||| |
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| T |
9491966 |
cagctcagtagagctgtttgcaccccctcaaggacggccctg |
9492007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 1176251 - 1176291
Alignment:
| Q |
405 |
agcttagtagagctgtttgcaccccctcaagaacggtcctg |
445 |
Q |
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|||| |||||||||||||||||||||||||| |||| |||| |
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| T |
1176251 |
agctcagtagagctgtttgcaccccctcaaggacggccctg |
1176291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 404 - 445
Target Start/End: Complemental strand, 11574488 - 11574447
Alignment:
| Q |
404 |
cagcttagtagagctgtttgcaccccctcaagaacggtcctg |
445 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
11574488 |
cagctcagtagagctgtttgcaccccctcaaggacggtcctg |
11574447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 445
Target Start/End: Original strand, 34620211 - 34620251
Alignment:
| Q |
405 |
agcttagtagagctgtttgcaccccctcaagaacggtcctg |
445 |
Q |
| |
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|||| ||||||| ||||||||||||||||||||||| |||| |
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| T |
34620211 |
agctcagtagagttgtttgcaccccctcaagaacggccctg |
34620251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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