View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_17 (Length: 666)
Name: NF1343_high_17
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 52 - 626
Target Start/End: Original strand, 31997911 - 31998485
Alignment:
| Q |
52 |
atgcctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcatggtaa |
151 |
Q |
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| T |
31997911 |
atgcctcgtggacgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgctaaatttcttggtca |
31998010 |
T |
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| Q |
152 |
cagttggtttgtttatctttctggctctgcataagaattggattttaannnnnnnaatcaaagtcttttgacctatttcactctggagtaattagtttct |
251 |
Q |
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| T |
31998011 |
cagttggtttgtttatctttctggctctgcataagaattggattttaatttttttaatcgaagtcttttgacctatttcactctggagtaattagtttct |
31998110 |
T |
|
| Q |
252 |
tacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactacaatgatat |
351 |
Q |
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| T |
31998111 |
tacctattggacaattgagaaatacattaattggagacaacactgtcaatcaactgtttactctcactctttggcgcattcggataaactgcaatgatgt |
31998210 |
T |
|
| Q |
352 |
tgtattcaacaaaggtcagatccatgctttaagatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagcaagagt |
451 |
Q |
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| T |
31998211 |
tgtattcaacaaaggtcagatccatgctttaaaatcaagaagtgtctacttttgctgagcacttcaatcaatttgcaaaatccgagcctgcagcaagagt |
31998310 |
T |
|
| Q |
452 |
atatcagatcacgttcgagtgaatactacaaatgggagtgcttcgtcagttggtatccttaaaatcaatattgatgcaggctgttttgaggatcatttca |
551 |
Q |
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| T |
31998311 |
atatctgatcacgttcgagtgaatactacaaatgggagtgcttcaccagttggtatccttaaaatcaatattcatgcaggctgttttgaggatcatttca |
31998410 |
T |
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| Q |
552 |
cttgctggggttgaaagcgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaag |
626 |
Q |
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| T |
31998411 |
cttgctggggttgaaagcgtggaatcatgaagggatgctttctgcagctgcaacaaagagggagatgtgacaaag |
31998485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 507 - 615
Target Start/End: Original strand, 42612827 - 42612936
Alignment:
| Q |
507 |
tccttaaaatcaatattgatgcaggctgttttgaggatcatttcacttgctgggg-ttgaaagcgtggaatcatgaagggatgctttctgcagctgcaac |
605 |
Q |
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| T |
42612827 |
tccttaaaattaatattgatgcaggttgttttgaggaacatttcacttgttggggattgattgtgaggaaccatgaagggttggtttctgcagctgcaac |
42612926 |
T |
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| Q |
606 |
aaagagggag |
615 |
Q |
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| T |
42612927 |
aaagagggag |
42612936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 55 - 137
Target Start/End: Original strand, 15843038 - 15843120
Alignment:
| Q |
55 |
cctcgtggatgtggacttgcataataggaggtggtctttctggagggaaaaatgtgcctctggaaggaagtatattagctgct |
137 |
Q |
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| T |
15843038 |
cctcgtggatgtggacttgcatagtaggagatggtcttgttggagggggcaatgtgcctctggagggaagtacattacctgct |
15843120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 629 - 661
Target Start/End: Complemental strand, 31581864 - 31581832
Alignment:
| Q |
629 |
ctagctgttgcattcaaatccaatggatatttt |
661 |
Q |
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| T |
31581864 |
ctagctgttgcattcaaatccaatggatatttt |
31581832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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