View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_18 (Length: 656)
Name: NF1343_high_18
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 6 - 379
Target Start/End: Complemental strand, 29612201 - 29611821
Alignment:
| Q |
6 |
aggagcagagaccaaaaacctcaatttgtactcaccgttgattgtaatcccaagt--------attgactt-cttgaaaaagcagggaacgaatgtgtgt |
96 |
Q |
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| T |
29612201 |
aggaacagaaaccaaaaacctcaatttgtactcaccgttgattgtggtcccaagtgattcagtaatgattgacttgaaaaagcagggaacgaatctgtgt |
29612102 |
T |
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| Q |
97 |
aggggtgcagttgtcctgaaaacatgcacatcaaataaaaactttgtgttagatatttgttagaatttgtgtaggtagttagaagttaattatgattaga |
196 |
Q |
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| T |
29612101 |
agtagtgcagttgtcctgaaaacatgcacatcaaataaaaact--gtgttagatatttgttagaatttgtttaggtagttagaagttaattatgattaga |
29612004 |
T |
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| Q |
197 |
tggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcat |
296 |
Q |
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| T |
29612003 |
tggaagtttattatgttagttaacttgggatcacaatataaaggtgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcat |
29611904 |
T |
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| Q |
297 |
ctctctctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatccaccatgaatgc |
379 |
Q |
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| T |
29611903 |
ctttctctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatccaccatgaatgc |
29611821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 439 - 627
Target Start/End: Complemental strand, 29611761 - 29611575
Alignment:
| Q |
439 |
gagctggatcatgtcttcaatgagattttgcatctttctccatatgatattactaatatcttgttggatatatgtgagcaatcaaaagtgtcaagtgcat |
538 |
Q |
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| T |
29611761 |
gagctggatcatgtcttcaatgagattttgcatctttctccatatgatattactaatatcttgttggatat--gtgagcaatcaaaagtgtcaagtgcat |
29611664 |
T |
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| Q |
539 |
actgttctgcaagaaatcttgtatttccaatcaccaaagccatgttggggaggtttttaaggagattcatcattaatggtcttgaatat |
627 |
Q |
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| T |
29611663 |
actgttctgcaagaaatcttgtatttccaatcaccaaagccatgttagggaggtttttaaggagattcatcattaatggtcttgaatat |
29611575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 181 - 270
Target Start/End: Original strand, 38467139 - 38467228
Alignment:
| Q |
181 |
gttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
270 |
Q |
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| T |
38467139 |
gttagttatgattaggtggaaatttgttatgttagttaacttgggatcactatataaagatgtatcctaccctaattgaatcatattctt |
38467228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 369
Target Start/End: Complemental strand, 46959071 - 46958876
Alignment:
| Q |
175 |
ttagaagttaattatgattagatggaagtttattatgttagttaacttggga---tcacaatataaagttgtatcctaccgtaattgt-atcatattctt |
270 |
Q |
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| T |
46959071 |
ttagaagttagttatgattaggtggaagtttgttagattagttaccttggatcactcactatacaaaggtgtattctaccctaatttttatcacattctt |
46958972 |
T |
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| Q |
271 |
tggtctattaattccatataattcatctctctctcaatttatttctcttagttgggctcaaccatgtttctcaacatggtatgggagccatgacatcca |
369 |
Q |
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| T |
46958971 |
cattttattaattcca-attattcacctttctctcagtttattt-tcttggttggg-tcaaccatggttttcaacatggtatcagagccataacatcca |
46958876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 316
Target Start/End: Complemental strand, 25953405 - 25953296
Alignment:
| Q |
207 |
ttatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctttggtctattaattccatataattcatctctctctca |
306 |
Q |
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| T |
25953405 |
ttatgttagttaacttaagattattatataaaagtgtatcctaccctagttatatcatattcttcattctattatttcaaaataattcatatttttctca |
25953306 |
T |
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| Q |
307 |
atttatttct |
316 |
Q |
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| T |
25953305 |
atttatttct |
25953296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 352
Target Start/End: Complemental strand, 45518884 - 45518804
Alignment:
| Q |
274 |
tctattaattccatataattcatctctctctcaatttattt--ctcttagttgggctcaaccatgtttctcaacatggtat |
352 |
Q |
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| T |
45518884 |
tctatcaatttcaaataatcaatctttctctcaatttatttttctctttgttgggctataccatgcttctcaacatggtat |
45518804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 172 - 270
Target Start/End: Complemental strand, 17236659 - 17236561
Alignment:
| Q |
172 |
tagttagaagttaattatgattagatggaagtttattatgttagttaacttgggatcacaatataaagttgtatcctaccgtaattgtatcatattctt |
270 |
Q |
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| T |
17236659 |
tagttagaagttagttatgattaggtggaagttaattatgttagttaccttgggatcactgtataaaggtatatcttactctaatcgtatcatattctt |
17236561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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