View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1343_high_19 (Length: 655)
Name: NF1343_high_19
Description: NF1343
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1343_high_19 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: scaffold0536 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 164 - 651
Target Start/End: Complemental strand, 7527 - 7041
Alignment:
| Q |
164 |
tcatttgaacacttattttgtgcctaccaacacatggttggtagtattatatgtaaataaattagtttacatttctttagagcataatgaacataatctt |
263 |
Q |
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| T |
7527 |
tcatttgaacacttatttagtgcctaccaacacatggttggtagtattatatgtaaataaattagtttacatttctttagagcataatgaacataatctt |
7428 |
T |
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| Q |
264 |
ccttcgnnnnnnn-tgaacaaaatctaaataactcgctttagaaaactttcatctcaataatccttggtggagatgctctttaaaaagaataaacttttt |
362 |
Q |
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| T |
7427 |
ccttcgaaaaaaaatgaacaaaatctaaataactcgctttagaaaactttcatctcaataatccttggtggagatgctctttaaaaagaataaacttttt |
7328 |
T |
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| Q |
363 |
ctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgatcatgttttctgtcaaatgtgattttgctctttg-ctattattac |
461 |
Q |
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| T |
7327 |
ctacaaaaacaaaacaatgttgatgaaagaagccatctatttccggccacaacgatcatgttttctgtcaaatgtgattttgctctttgcctattattac |
7228 |
T |
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| Q |
462 |
acaagtgtttcatgctacatccaacatactccttaacacaccgctctttatttatatttgagtctatcaaattcataaacannnnnnnnnnnnnnnctat |
561 |
Q |
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| T |
7227 |
acaagtgtttcatgctacatccaacatactccttaacaaaccgctctttatttatatttgagtctatcaaattcataatcatttttaattttttttctat |
7128 |
T |
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| Q |
562 |
tattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaaccagaaaattacgagatttatatattattggaca |
651 |
Q |
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| T |
7127 |
tattgagtctatagtatttcatttatctcaattggttcctttttcatcattctgaaccag---ataacgagatttatattttgttggaca |
7041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 30 - 132
Target Start/End: Complemental strand, 7642 - 7538
Alignment:
| Q |
30 |
attaacacataaagaaaagtattatcagcaggttttgactcaattgaaaaatgcctaaattcatttgtgtg--taggttttcatgtgatatttgacaatc |
127 |
Q |
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| T |
7642 |
attaacacacaaagaaaagtattatccgcaggttttgactcaattgaaaaatgcctaaattcatctgtgtgtataggttttcatgtgatatttgacaatc |
7543 |
T |
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| Q |
128 |
cgtct |
132 |
Q |
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|||| |
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| T |
7542 |
agtct |
7538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 584 - 624
Target Start/End: Complemental strand, 11094 - 11053
Alignment:
| Q |
584 |
ttatctcaattggttcctttttcatcattct-gaaccagaaa |
624 |
Q |
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| T |
11094 |
ttatctcaattggtgcctttttcatcattctggaaccagaaa |
11053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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